TABLE 4.
Binding free energies calculated using the MM/GBSA approach
| Binding complex | Energy componentsa,b | ||||
|---|---|---|---|---|---|
| ΔEele | ΔEvdW | ΔGGB | ΔGSA | ΔGbindb | |
| RfxMCR‒M-CoA | 253.70 ± 9.48 | −60.91 ± 4.60 | −260.58 ± 8.57 | −9.97 ± 0.45 | −77.76 ± 4.40 |
| RfxMCR(N)c‒MSA | 42.57 ± 2.31 | −7.35 ± 3.21 | −50.14 ± 1.77 | −1.83 ± 0.52 | −16.75 ± 2.54 |
| RfxMCR(C)d‒MSA | 34.69 ± 4.25 | −7.36 ± 2.64 | −36.86 ± 3.50 | −2.17 ± 0.59 | −11.69 ± 2.14 |
Energies are in kilocalories per mole.
ΔGbind ≈ ΔEele + ΔEvdW + ΔGGB + ΔGSA.
RfxMCR(N) represents that the NADP+–MSA-bound at the N-terminal SDR1–2 domains of full-length RfxMCR.
RfxMCR(C) represents that the NADPH–MSA-bound at the C-terminal SDR3–4 domains of full-length RfxMCR.