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. 2023 Jun 6;14(4):e03233-22. doi: 10.1128/mbio.03233-22

TABLE 4.

Binding free energies calculated using the MM/GBSA approach

Binding complex Energy componentsa,b
ΔEele ΔEvdW ΔGGB ΔGSA ΔGbindb
RfxMCR‒M-CoA 253.70 ± 9.48 −60.91 ± 4.60 −260.58 ± 8.57 −9.97 ± 0.45 −77.76 ± 4.40
RfxMCR(N)c‒MSA 42.57 ± 2.31 −7.35 ± 3.21 −50.14 ± 1.77 −1.83 ± 0.52 −16.75 ± 2.54
RfxMCR(C)d‒MSA 34.69 ± 4.25 −7.36 ± 2.64 −36.86 ± 3.50 −2.17 ± 0.59 −11.69 ± 2.14
a

Energies are in kilocalories per mole.

b

ΔGbind ≈ ΔEele + ΔEvdW + ΔGGB + ΔGSA.

c

RfxMCR(N) represents that the NADP+–MSA-bound at the N-terminal SDR1–2 domains of full-length RfxMCR.

d

RfxMCR(C) represents that the NADPH–MSA-bound at the C-terminal SDR3–4 domains of full-length RfxMCR.