Table 6.
Genomes de novo annotated with GALBA using reference protein sets listed in Additional file 1: Table S1 as use cases that demonstrate the applicability of GALBA
| Species | Assembly | Size (Gbp) | nSeqs | N50 (nt) | BUSCO C (%) | RM (%) |
|---|---|---|---|---|---|---|
| Vespula vulgaris | GCA_014466185.1 | 0.18 | 35 | 8,304,510 | 94.9 | 19.5 |
| Vespula germanica | GCA_014466195.1 | 0.18 | 133 | 8,396,154 | 93.6 | 19.9 |
| Vespula pensylvanica | GCA_014466175.1 | 0.18 | 225 | 8,532,720 | 96.2 | 19.4 |
| Polistes dominula | GCA_001465965.1 | 0.21 | 1,483 | 1,625,592 | 95.7 | 48.1 |
| Balaenoptera bonaerensis | GCA_000978805.1 | 2.23 | 421,444 | 20,082 | 54.1 | 34.0 |
| Eubalaena japonica | GCA_004363455.1 | 2.69 | 1,353,963 | 39,813 | 74.9 | 43.3 |
| Inia geoffrensis | GCA_004363515.1 | 2.60 | 1,213,610 | 26,707 | 67.7 | 43.8 |
| Kogia breviceps | GCA_004363705.1 | 2.76 | 1,252,072 | 28,812 | 66.1 | 41.3 |
| Phocoena phocoena | GCA_004363495.1 | 2.70 | 1,331,158 | 115,969 | 85.9 | 44.7 |
| Platanista gangetica | GCA_004363435.1 | 2.67 | 1,098,790 | 23,933 | 59.1 | 44.7 |
| Ziphius cavirostris | GCA_004364475.1 | 3.15 | 3,758,276 | 3,608 | 39.9 | 45.1 |
| Coix aquatica | GCA_009725075.1 | 1.62 | 2,012 | 148,397,812 | 97.8 | 83.3 |
nSeqs number of sequences in the assembly, BUSCO C percentage of BUSCOs detected as complete, RM percentage of repeatmasked nucleotides in assembly