Antibodies |
|
Rabbit polyclonal anti-MT-CO1 |
Novus biologicals |
Cat# NBP2-29949 |
Rabbit polyclonal anti-MT-ND6 |
Novus biologicals |
Cat# NBP1-70650; RRID: AB_11006834 |
Mouse monoclonal anti-MT-ATP6 (clone 1G7-1G2) |
Sigma-Aldrich |
Cat#: MABS1995 |
Rabbit monoclonal anti-NDUFB8 (clone JG61-36) |
Novus biologicals |
Cat# NBP2-75586 |
Rabbit monoclonal anti-SDHA (clone D6J9M) |
Cell Signaling Technology |
Cat# 11998; RRID: AB_2750900 |
Mouse monoclonal anti-ATP5A (clone 15H4) |
Abcam |
Cat# ab14748; RRID: AB_301447 |
Rabbit monoclonal anti-GLUD1(clone EPR11369(B)) |
Abcam |
Cat# ab166618; RRID: AB_2815030 |
Rabbit monoclonal anti-ME2 (clone EPR7218) |
Abcam |
Cat#:ab126616; RRID: AB_11131748 |
Mouse polyclonal anti-POLRMT |
Abcam |
Cat#:ab167368 |
Mouse monoclonal anti-NRF2 |
Abcam |
Cat#: ab89443; RRID: AB_2041334 |
Rabbit polyclonal anti-PGC1α |
Abcam |
Cat#: ab54481; RRID: AB_881987 |
Mouse monoclonal anti-beta-Actin (clone 8H10D10) |
Cell Signaling Technology |
Cat#:3700; RRID: AB_2242334 |
Rabbit polyclonal anti-GAPDH |
Proteintech |
Cat#: 10494-1-AP; RRID: AB_2263076 |
Mouse monoclonal anti-Histone H3 (clone 96C10) |
Cell Signaling Technology |
Cat#:3638; RRID: AB_1642229 |
Mouse monoclonal anti-Flag (clone M2) |
Sigma-Aldrich |
Cat#:F1804; RRID: AB_262044 |
Rabbit polyclonal anti-ME1 |
Abcam |
Cat#:ab97445; RRID: AB_10679994 |
Rabbit monoclonal anti-ME2 (clone EP7217) |
Abcam |
Cat#: ab139686 |
Rabbit monoclonal anti-ME3 (clone EPR10378) |
Abcam |
Cat#:ab172972 |
Rabbit polyclonal anti-ACO2 |
Proteintech |
Cat#: 11134-1-AP |
Rabbit polyclonal anti-2SC antibody |
Discovery Antibodies |
Cat#: crb2005017 |
Rabbit polyclonal anti-DUT |
Proteintech |
Cat#: 13740-1-AP |
Rabbit polyclonal anti-GOT2 |
Proteintech |
Cat#: 14800-1-AP |
Mouse monoclonal anti-GFP (clone 9F9.F9) |
Abcam |
Cat#:ab1218; RRID: AB_298911 |
Mouse monoclonal anti-HA (clone F-7) |
Santa Cruz |
Cat#:sc-7392; RRID: AB_627809 |
Rabbit polyclonal anti-MRPL45 |
Sigma-Aldrich |
Cat# HPA023373; RRID: AB_1854114 |
Rabbit monoclonal anti-MRRF [clone EPR14140(B)] |
Abcam |
Cat#: ab181223 |
Rabbit polyclonal anti-MRPL12 |
Abcam |
Cat#: ab154961 |
Rabbit monoclonal anti-MRPS35 [clone EPR11731(2)] |
Abcam |
Cat#: ab182160 |
Rabbit polyclonal anti-MT-ND5 |
Proteintech |
Cat#: 55410-1-AP |
Rabbit polyclonal anti-MT-CYB |
Proteintech |
Cat#: 55090-1-AP |
Rabbit polyclonal anti-MT-CO2 |
Proteintech |
Cat#: 55070-1-AP |
Mouse monoclonal anti-His (clone 27E8) |
Cell Signaling Technology |
Cat# 2366; RRID: AB_2115719 |
Rabbit monoclonal anti-TOM20 (clone 29) |
BD Biosciences |
Cat#612278; RRID: AB_399595 |
Rabbit polyclonal anti-me-ME2(R67) |
This paper |
N/A |
Rabbit polyclonal anti-PRMT1 |
Abcam |
Cat#:2449; RRID: AB_2237696 |
Rabbit monoclonal anti-Mono-Methyl Arginine (clone Me-R4-100) |
Cell Signaling Technology |
Cat#:8015; RRID: AB_10891776 |
Mouse monoclonal anti-CARM1 |
Arigo Biolaboratories |
Cat#: ARG53996
|
|
Bacterial strains |
|
Escherichia coli BL21 |
Invitrogen |
C600003 |
|
Chemicals, peptides, and recombinant proteins |
|
MitoTracke Green FM |
Invitrogen |
M7514 |
Dimethyl fumarate |
Sigma-Aldrich |
242926; CAS: 624-49-7 |
Diethyl fumarate |
Sigma-Aldrich |
D95654; CAS: 623-91-6 |
Sodium fumarate dibasic |
Sigma-Aldrich |
F1506; CAS: 17013-01-3 |
Monomethyl fumarate |
Sigma-Aldrich |
651419; CAS: 2756-87-8 |
Monoethyl fumarate |
Sigma-Aldrich |
128422; CAS: 2459-05-4 |
Dimethyl malate |
Sigma-Aldrich |
374318; CAS: 617-55-0 |
Diethyl oxalacetate |
Sigma-Aldrich |
171263; CAS: 40876-98-0 |
MEM Non-essential Amino Acid Solution |
Sigma-Aldrich |
M7145 |
MEM Amino Acids solution |
Sigma-Aldrich |
M5550 |
[U-13C]-fumarate |
Cambridge Isotope Laboratories |
CLM-1529; CAS: 201595-62-2 |
Maleimide-PEG2-Biotin |
Thermo Scientific |
A39261 |
Glutaraldehyde |
Sigma-Aldrich |
340855; CAS: 111-30-8 |
TAS114 |
MedChemExpress |
HY-124062; CAS: 1198221-21-4 |
Succinate |
Sigma-Aldrich |
S9637; CAS: 6106-21-4 |
Malate |
Sigma-Aldrich |
M1000; CAS: 97-67-6 |
AMI-1 sodium salt hydrate |
Sigma-Aldrich |
A9232 |
AMI-5 |
EMD Millipore |
539211; CAS: 17372-87-1 |
TC-E 5003 |
Tocris |
5099 |
S-adenosylmethionine |
Sigma-Aldrich |
A9384; CAS: 979-92-0 |
Unmodified R67 peptide |
This paper |
N/A |
Monomethylated R67 peptide |
This paper |
N/A |
Recombinant Human ME2 protein |
Abcam |
ab201360 |
SYPRO orange protein gel stain |
Invitrogen |
S6650 |
|
Critical commercial assays |
|
Glucose (GO) Assay Kit |
Sigma-Aldrich |
GAGO20 |
Glutamine and Glutamate Determination Kit |
Sigma-Aldrich |
GLN1 |
Mitochondria Isolation Kit |
Sigma-Aldrich |
MITOISO2 |
Glutamine Detection Assay Kit (Colorimetric) |
Abcam |
ab197011 |
Fumarate Assay Kit |
Sigma-Aldrich |
MAK060 |
NAD/NADH Quantitation Kit |
Sigma-Aldrich |
MAK037 |
Luminescent ATP Detection Assay Kit |
Abcam |
ab113849 |
Seahorse XF Cell Mito Stress Test Kit |
Agilent |
103015 |
MagniSort Mouse Hematopoietic Lineage Depletion Kit |
Invitrogen |
8804-6829-74 |
|
Deposited data |
|
Proteomic data |
This paper |
MassIVE:MSV000086778 |
|
Experimental models: Cell lines |
|
Human Cord Blood CD34+ Cells |
STEMCELL Technologies |
70008 |
Human:HL60 |
ATCC |
CCL-240 |
Human:THP1 |
ATCC |
TIB-202 |
Human:NOMO1 |
JCRB Cell Bank |
IFO50474 |
Human:KG1 |
ATCC |
CCL-246.1 |
Human:NB4 |
DSMZ |
ACC-207 |
Human:MONOMAC6 |
DSMZ |
ACC-124 |
Human:MOLM14 |
DSMZ |
ACC-777 |
Human:MV411 |
ATCC |
CRL-9591 |
Human:HEK293 |
ATCC |
CRL-1573 |
Human:A172 |
ATCC |
CRL-1620 |
Human:LN18 |
ATCC |
CRL-2610 |
Human:U87MG |
ATCC |
HTB-14 |
Human:U251MG |
Sigma-Aldrich |
09063001 |
Human:U118MG |
ATCC |
HTB-15 |
Human:BT549 |
ATCC |
HTB-122 |
Human:HCC1937 |
ATCC |
CRL-2336 |
Human: HCC38 |
ATCC |
CRL-2314 |
Human: HS578T |
ATCC |
HTB-126 |
Human: MDAMB231 |
ATCC |
HTB-26 |
Human: MDAMB468 |
ATCC |
HTB-132 |
Human: HepG2 |
ATCC |
HB-8065 |
Human: SKHEP1 |
ATCC |
HTB-52 |
Human: SNU423 |
ATCC |
CRL-2238 |
Human: SNU387 |
ATCC |
CRL-2237 |
Human: A375 |
ATCC |
CRL-1619 |
Human: SKMEL5 |
ATCC |
HTB-70 |
Human: SKMEL28 |
ATCC |
HTB-72 |
Human: MIAPaCa2 |
ATCC |
CRM-CRL-1420 |
Human: KP2 |
JCRB Cell Bank |
JCRB0181 |
Human: AsPC1 |
ATCC |
CRL-1682 |
Human: SW1990 |
ATCC |
CRL-2172 |
Human: BxPC3 |
ATCC |
CRL-1687 |
Human: U2OS |
ATCC |
HTB-96 |
Human: HeLa |
ATCC |
CCL-2 |
Human: DU145 |
ATCC |
HTB-81 |
Human: HCT116 |
ATCC |
CCL-247 |
Human: HT1080 |
ATCC |
CCL-121 |
|
Experimental models: Organisms/strains |
|
Mouse: C57BL/6J |
The Jackson Laboratory |
JAX: 000664 |
Mouse: NOD.Cg-Prkdcscid
Il2rgtm1Wjl/SzJ |
The Jackson Laboratory |
JAX: 005557 |
|
Recombinant DNA |
|
Human ME2 Mission shRNA-#1 |
Sigma-Aldrich |
TRCN0000064742 |
Human ME2 Mission shRNA-#2 |
Sigma-Aldrich |
TRCN0000294007 |
Human ADSL Mission shRNA-#1 |
Sigma-Aldrich |
TRCN0000078272 |
Human ADSL Mission shRNA-#2 |
Sigma-Aldrich |
TRCN0000078271 |
Human ASL Mission shRNA-#1 |
Sigma-Aldrich |
TRCN0000078310 |
Human ASL Mission shRNA-#2 |
Sigma-Aldrich |
TRCN0000078312 |
Human FAH Mission shRNA-#1 |
Sigma-Aldrich |
TRCN0000296459 |
Human FAH Mission shRNA-#2 |
Sigma-Aldrich |
TRCN0000050674 |
Human SDHA Mission shRNA-#1 |
Sigma-Aldrich |
TRCN0000028118 |
Human SDHA Mission shRNA-#2 |
Sigma-Aldrich |
TRCN0000028093 |
Human PRMT1 Mission shRNA-#1 |
Sigma-Aldrich |
TRCN0000310243 |
Human PRMT1 Mission shRNA-#2 |
Sigma-Aldrich |
TRCN0000035931 |
Mouse Me2 Mission shRNA-#1 |
Sigma-Aldrich |
TRCN0000332396 |
Mouse Me2 Mission shRNA-#2 |
Sigma-Aldrich |
TRCN0000332397 |
pcDNA3.1 |
Invitrogen |
V80020 |
pcDNA3.1-ME2-Flag |
This study |
N/A |
pcDNA3.1-ME2-HA |
This study |
N/A |
lentiCRISPR v2 |
Addgene |
Cat#52961 |
pLV-EF1a-IRES-Hygro |
Addgene |
Cat#85134 |
pLV-EF1a-IRES-Hygro-ME2-Flag |
This study |
N/A |
pLV-EF1a-IRES-Hygro-NRF2-Flag |
This study |
N/A |
pLV-EF1a-IRES-Hygro-SLC1A3-Flag |
This study |
N/A |
pEGFP-N1-FLAG |
Addgene |
Cat#60360 |
pEGFP-N1-FLAG-ME2 |
This study |
N/A |
pEGFP-PRMT1-9 |
(Herrmann et al., 2009) |
N/A |
pcDNA3.1-MRPL45-HA |
This study |
N/A |
pEGFPN1-MRPL45 |
This study |
N/A |
pQE1-MRPL45 |
This study |
N/A |
pSJ3-ME2-His |
This study |
N/A |
|
Software and algorithms |
|
FlowJo, version 10 |
FlowJo |
N/A |
PyMol2.1 |
https://pymol.org/2/
|
N/A |
GraphPad Prism 8 |
https://www.graphpad.com/
|
N/A |