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. Author manuscript; available in PMC: 2023 Sep 1.
Published in final edited form as: Cell Metab. 2021 Mar 25;33(5):1027–1041.e8. doi: 10.1016/j.cmet.2021.03.003

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit polyclonal anti-MT-CO1 Novus biologicals Cat# NBP2-29949
Rabbit polyclonal anti-MT-ND6 Novus biologicals Cat# NBP1-70650; RRID: AB_11006834
Mouse monoclonal anti-MT-ATP6 (clone 1G7-1G2) Sigma-Aldrich Cat#: MABS1995
Rabbit monoclonal anti-NDUFB8 (clone JG61-36) Novus biologicals Cat# NBP2-75586
Rabbit monoclonal anti-SDHA (clone D6J9M) Cell Signaling Technology Cat# 11998; RRID: AB_2750900
Mouse monoclonal anti-ATP5A (clone 15H4) Abcam Cat# ab14748; RRID: AB_301447
Rabbit monoclonal anti-GLUD1(clone EPR11369(B)) Abcam Cat# ab166618; RRID: AB_2815030
Rabbit monoclonal anti-ME2 (clone EPR7218) Abcam Cat#:ab126616; RRID: AB_11131748
Mouse polyclonal anti-POLRMT Abcam Cat#:ab167368
Mouse monoclonal anti-NRF2 Abcam Cat#: ab89443; RRID: AB_2041334
Rabbit polyclonal anti-PGC1α Abcam Cat#: ab54481; RRID: AB_881987
Mouse monoclonal anti-beta-Actin (clone 8H10D10) Cell Signaling Technology Cat#:3700; RRID: AB_2242334
Rabbit polyclonal anti-GAPDH Proteintech Cat#: 10494-1-AP; RRID: AB_2263076
Mouse monoclonal anti-Histone H3 (clone 96C10) Cell Signaling Technology Cat#:3638; RRID: AB_1642229
Mouse monoclonal anti-Flag (clone M2) Sigma-Aldrich Cat#:F1804; RRID: AB_262044
Rabbit polyclonal anti-ME1 Abcam Cat#:ab97445; RRID: AB_10679994
Rabbit monoclonal anti-ME2 (clone EP7217) Abcam Cat#: ab139686
Rabbit monoclonal anti-ME3 (clone EPR10378) Abcam Cat#:ab172972
Rabbit polyclonal anti-ACO2 Proteintech Cat#: 11134-1-AP
Rabbit polyclonal anti-2SC antibody Discovery Antibodies Cat#: crb2005017
Rabbit polyclonal anti-DUT Proteintech Cat#: 13740-1-AP
Rabbit polyclonal anti-GOT2 Proteintech Cat#: 14800-1-AP
Mouse monoclonal anti-GFP (clone 9F9.F9) Abcam Cat#:ab1218; RRID: AB_298911
Mouse monoclonal anti-HA (clone F-7) Santa Cruz Cat#:sc-7392; RRID: AB_627809
Rabbit polyclonal anti-MRPL45 Sigma-Aldrich Cat# HPA023373; RRID: AB_1854114
Rabbit monoclonal anti-MRRF [clone EPR14140(B)] Abcam Cat#: ab181223
Rabbit polyclonal anti-MRPL12 Abcam Cat#: ab154961
Rabbit monoclonal anti-MRPS35 [clone EPR11731(2)] Abcam Cat#: ab182160
Rabbit polyclonal anti-MT-ND5 Proteintech Cat#: 55410-1-AP
Rabbit polyclonal anti-MT-CYB Proteintech Cat#: 55090-1-AP
Rabbit polyclonal anti-MT-CO2 Proteintech Cat#: 55070-1-AP
Mouse monoclonal anti-His (clone 27E8) Cell Signaling Technology Cat# 2366; RRID: AB_2115719
Rabbit monoclonal anti-TOM20 (clone 29) BD Biosciences Cat#612278; RRID: AB_399595
Rabbit polyclonal anti-me-ME2(R67) This paper N/A
Rabbit polyclonal anti-PRMT1 Abcam Cat#:2449; RRID: AB_2237696
Rabbit monoclonal anti-Mono-Methyl Arginine (clone Me-R4-100) Cell Signaling Technology Cat#:8015; RRID: AB_10891776
Mouse monoclonal anti-CARM1 Arigo Biolaboratories Cat#: ARG53996

Bacterial strains

Escherichia coli BL21 Invitrogen C600003

Chemicals, peptides, and recombinant proteins

MitoTracke Green FM Invitrogen M7514
Dimethyl fumarate Sigma-Aldrich 242926; CAS: 624-49-7
Diethyl fumarate Sigma-Aldrich D95654; CAS: 623-91-6
Sodium fumarate dibasic Sigma-Aldrich F1506; CAS: 17013-01-3
Monomethyl fumarate Sigma-Aldrich 651419; CAS: 2756-87-8
Monoethyl fumarate Sigma-Aldrich 128422; CAS: 2459-05-4
Dimethyl malate Sigma-Aldrich 374318; CAS: 617-55-0
Diethyl oxalacetate Sigma-Aldrich 171263; CAS: 40876-98-0
MEM Non-essential Amino Acid Solution Sigma-Aldrich M7145
MEM Amino Acids solution Sigma-Aldrich M5550
[U-13C]-fumarate Cambridge Isotope Laboratories CLM-1529; CAS: 201595-62-2
Maleimide-PEG2-Biotin Thermo Scientific A39261
Glutaraldehyde Sigma-Aldrich 340855; CAS: 111-30-8
TAS114 MedChemExpress HY-124062; CAS: 1198221-21-4
Succinate Sigma-Aldrich S9637; CAS: 6106-21-4
Malate Sigma-Aldrich M1000; CAS: 97-67-6
AMI-1 sodium salt hydrate Sigma-Aldrich A9232
AMI-5 EMD Millipore 539211; CAS: 17372-87-1
TC-E 5003 Tocris 5099
S-adenosylmethionine Sigma-Aldrich A9384; CAS: 979-92-0
Unmodified R67 peptide This paper N/A
Monomethylated R67 peptide This paper N/A
Recombinant Human ME2 protein Abcam ab201360
SYPRO orange protein gel stain Invitrogen S6650

Critical commercial assays

Glucose (GO) Assay Kit Sigma-Aldrich GAGO20
Glutamine and Glutamate Determination Kit Sigma-Aldrich GLN1
Mitochondria Isolation Kit Sigma-Aldrich MITOISO2
Glutamine Detection Assay Kit (Colorimetric) Abcam ab197011
Fumarate Assay Kit Sigma-Aldrich MAK060
NAD/NADH Quantitation Kit Sigma-Aldrich MAK037
Luminescent ATP Detection Assay Kit Abcam ab113849
Seahorse XF Cell Mito Stress Test Kit Agilent 103015
MagniSort Mouse Hematopoietic Lineage Depletion Kit Invitrogen 8804-6829-74

Deposited data

Proteomic data This paper MassIVE:MSV000086778

Experimental models: Cell lines

Human Cord Blood CD34+ Cells STEMCELL Technologies 70008
Human:HL60 ATCC CCL-240
Human:THP1 ATCC TIB-202
Human:NOMO1 JCRB Cell Bank IFO50474
Human:KG1 ATCC CCL-246.1
Human:NB4 DSMZ ACC-207
Human:MONOMAC6 DSMZ ACC-124
Human:MOLM14 DSMZ ACC-777
Human:MV411 ATCC CRL-9591
Human:HEK293 ATCC CRL-1573
Human:A172 ATCC CRL-1620
Human:LN18 ATCC CRL-2610
Human:U87MG ATCC HTB-14
Human:U251MG Sigma-Aldrich 09063001
Human:U118MG ATCC HTB-15
Human:BT549 ATCC HTB-122
Human:HCC1937 ATCC CRL-2336
Human: HCC38 ATCC CRL-2314
Human: HS578T ATCC HTB-126
Human: MDAMB231 ATCC HTB-26
Human: MDAMB468 ATCC HTB-132
Human: HepG2 ATCC HB-8065
Human: SKHEP1 ATCC HTB-52
Human: SNU423 ATCC CRL-2238
Human: SNU387 ATCC CRL-2237
Human: A375 ATCC CRL-1619
Human: SKMEL5 ATCC HTB-70
Human: SKMEL28 ATCC HTB-72
Human: MIAPaCa2 ATCC CRM-CRL-1420
Human: KP2 JCRB Cell Bank JCRB0181
Human: AsPC1 ATCC CRL-1682
Human: SW1990 ATCC CRL-2172
Human: BxPC3 ATCC CRL-1687
Human: U2OS ATCC HTB-96
Human: HeLa ATCC CCL-2
Human: DU145 ATCC HTB-81
Human: HCT116 ATCC CCL-247
Human: HT1080 ATCC CCL-121

Experimental models: Organisms/strains

Mouse: C57BL/6J The Jackson Laboratory JAX: 000664
Mouse: NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ The Jackson Laboratory JAX: 005557

Recombinant DNA

Human ME2 Mission shRNA-#1 Sigma-Aldrich TRCN0000064742
Human ME2 Mission shRNA-#2 Sigma-Aldrich TRCN0000294007
Human ADSL Mission shRNA-#1 Sigma-Aldrich TRCN0000078272
Human ADSL Mission shRNA-#2 Sigma-Aldrich TRCN0000078271
Human ASL Mission shRNA-#1 Sigma-Aldrich TRCN0000078310
Human ASL Mission shRNA-#2 Sigma-Aldrich TRCN0000078312
Human FAH Mission shRNA-#1 Sigma-Aldrich TRCN0000296459
Human FAH Mission shRNA-#2 Sigma-Aldrich TRCN0000050674
Human SDHA Mission shRNA-#1 Sigma-Aldrich TRCN0000028118
Human SDHA Mission shRNA-#2 Sigma-Aldrich TRCN0000028093
Human PRMT1 Mission shRNA-#1 Sigma-Aldrich TRCN0000310243
Human PRMT1 Mission shRNA-#2 Sigma-Aldrich TRCN0000035931
Mouse Me2 Mission shRNA-#1 Sigma-Aldrich TRCN0000332396
Mouse Me2 Mission shRNA-#2 Sigma-Aldrich TRCN0000332397
pcDNA3.1 Invitrogen V80020
pcDNA3.1-ME2-Flag This study N/A
pcDNA3.1-ME2-HA This study N/A
lentiCRISPR v2 Addgene Cat#52961
pLV-EF1a-IRES-Hygro Addgene Cat#85134
pLV-EF1a-IRES-Hygro-ME2-Flag This study N/A
pLV-EF1a-IRES-Hygro-NRF2-Flag This study N/A
pLV-EF1a-IRES-Hygro-SLC1A3-Flag This study N/A
pEGFP-N1-FLAG Addgene Cat#60360
pEGFP-N1-FLAG-ME2 This study N/A
pEGFP-PRMT1-9 (Herrmann et al., 2009) N/A
pcDNA3.1-MRPL45-HA This study N/A
pEGFPN1-MRPL45 This study N/A
pQE1-MRPL45 This study N/A
pSJ3-ME2-His This study N/A

Software and algorithms

FlowJo, version 10 FlowJo N/A
PyMol2.1 https://pymol.org/2/ N/A
GraphPad Prism 8 https://www.graphpad.com/ N/A