Table 1.
List of primers used in the study.
| Primer # | Sequence | Purpose |
|---|---|---|
| SD1_M | ccgctcggcggcttctaatcgccggtctctagccactgggatcc | Forward primer to amplify the backbone of pYG026 plasmid. Overhang sequence from 5’PGAL1 for Gibson assembly |
| SD2_M | cagatccgctagggataacagggtaatatgcatgc | Reverse primer to amplify the backbone of pYG026 plasmid. |
| SD3 | ggcgcgccacttctaaataagc | Forward primer to amplify the ADH1 terminator region starting from the 20bps between the stop codon of yeGFP and the start of the terminator |
| SD4 | ccctgttatccctagcggatctg | Reverse primer to amplify the ADH1 terminator region from the region right outside the terminator so the ADH1 insert has some plasmid background sequence for Gibson assembly |
| SD5 | tatactttaacgtcaaggagatgtctaaaggtgaagaattattcactgg | Reverse primer to be used with SD1_M primer to linearize the pYG026 backbone for the purpose of inserting GAL1 promoter upstream of yeGFP. Has overhang sequences from 3’PGAL1 |
| SD6 | cgattagaagccgccgagcgg | Forward primer to amplify the GAL1 promoter from the pSD01 vector for Gibson assembly |
| SD7 | ctccttgacgttaaagtatagaggtatattaacaattttttgttg | Reverse primer to amplify the GAL1 promoter from the pSD01 vector for Gibson assembly |
| SD8 | gcttatttagaagtggcgcgccttacacgttaattcttgcgcttgcgcagg | Reverse primer to amplify the yeGFP-mODC CDS from the pSD01 plasmid. Has overhang sequences containing plasmid sequence upstream of 5’TADH1 and from 5’TADH1 |
| SD9 | tatactttaacgtcaaggagatgggatcctctaaaggtgaagaattattc | Forward primer to amplify the yeGFP-CLN2 CDS from pITGFP89 plasmid. Has overhang sequences from the 3’PGAL1. |
| SD10 | gcttatttagaagtggcgcgccctaagatcttattacttgggtattgcccatac | Reverse primer to amplify the yeGFP-CLN2 CDS from pITGFP89. Has overhang sequences containing plasmid sequence upstream of 5’TADH1 and from 5’TADH1 |
| SD16 | tatactttaacgtcaaggagatggtctccaaaggtgaagaactgtttacag | Forward primer to amplify the yeGFP-mODC CDS from the pSD01 plasmid. Has overhang sequences from the 3’PGAL1 |
| SD23 | ggggttccgcgcacatttccc | Plasmid specific reverse primer to screen for multiple genomic integration events at the LEU2 –BstEII region. |
| SD24 | ggaggtcgactacgtcgttaaggc | Yeast chromosome III specific reverse primer annealing 458 bps downstream of the endogenous LEU2 CDS. used for PCR screen for single genomic integration event. |
| SD25 | cccaacagttgcgcagcctgaatgg | Plamisd specific forward primer to be used with either SD23 (for multiple genomic integration) or SD24 (for single genomic integration) |
| SD26 | ccgtaaaaggaaattacatggcgagtgtcacataatagcgacggatccccgggttaattaaggcg | BAR1 gene deletion: Forward primer to amplify the His3MX cassette from pFA6-his3MX. Has 43bps of overhang sequences from 214bps upstream of endogenous BAR1 gene. |
| SD27 | gcttgtcgcgtgccagatcggggttcaattccccgtcgcgcgagctcgtttaaactggatggc | BAR1 gene deletion: Reverse primer to amplify the His3MX cassette from pFA6-his3MX. Has 40bps of overhang sequences from 200bps downstream of endogenous BAR1 gene. |