Table 1.
Requested and simulated transcript models and read counts for ONT and PacBio datasets used in SQANTI-SIM validation.
| Structural category |
Requested | Simulated | ||||
|---|---|---|---|---|---|---|
| Isoforms | ONT reads | PacBio reads | Isoforms | ONT reads | PacBio reads | |
| FSM | 43000 | 5377592 | 745678 | 43000 | 5377592 | 745678 |
| ISM | 1000 | 31129 | 11894 | 1000 | 31129 | 11894 |
| NIC | 1000 | 29911 | 10443 | 1000 | 29911 | 10443 |
| NNC | 1000 | 24630 | 11730 | 1000 | 24630 | 11730 |
| Genic Genomic | 1000 | 27806 | 12563 | 1000 | 27806 | 12563 |
| Antisense | 1000 | 29078 | 11982 | 1000 | 29078 | 11982 |
| Fusion | 1000 | 27960 | 12963 | 1000 | 27960 | 12963 |
| Intergenic | 1000 | 28270 | 12057 | 1000 | 28270 | 12057 |