Table 1.
Primer list for RT-PCR
| Gene | Strand | Accession # | Sequence(5′-3′) | Siza | Exon | Source |
|---|---|---|---|---|---|---|
| Prox1 | s | NM_008937 | GTA AGA CAT CAC CGC GTG C | 218 | 1 | NIH Primer Tool |
| as | TCA TGG TCA GGC ATC ACT GG | 2 | ||||
| CD11b (Itgam) | s | NM_008401 | ATG GAC GCT GAT GGC AAT ACC | 203 | 13 | MGH Primer Bank ID 668048a1 |
| as | TCC CCA TTC ACG TCT CCC A | 14 | ||||
| Pdgfrα | s | NM_011058 | AGA GTT ACA CGT TTG AGC TGT C | 252 | 8 | MGH Primer Bank 26349287a1 |
| as | GTC CCT CCA CGG TAC TCC T | 10 | ||||
| - | ||||||
| Myh11 | s | NM_013607 | AAG CTG CGG CTA GAG GTC A | 238 | 33 | MGH Primer Bank ID 7305295a1 |
| as | CCC TCC CTT TGA TGG CTG AG | 34 | ||||
| CD117 (cKit) | s | NM_021099 | CGC CTG CCG AAA TGT ATG ACG | 162 | 21 | (Drumm et al., 2018) |
| as | GGT TCT CTG GGT TGG GGT TGC | 23 | ||||
| Pdgfrβ | s | NM_008809 | AGC TAC ATG GCC CCT TAT GA | 367 | 16 | (Basciani et al., 2004) |
| as | GGA TCC CAA AAG ACC AGA CA | 19 | ||||
| CD144 (VE-cadherin) | s | NM_009868 | CTT CCT TAC TGC CCT CAT TGT | 313 | 3 | IDT Primer Quest |
| as | CTG TTT CTC TCG GTC CAA GTT | 5 | ||||
| Nos3 (eNOS) | s | NM_008713 | ctg cca cct gat cct aac ttg | 143 | 22 | IDT Real time primer tool |
| as | cag cca aac acc aaa gtc atg | 23 | ||||
| Acta2 (Smooth Muscle Actin) | s | NM_007392 | GAG CTA CGA ACT GCC TGA C | 129 | 7 | IDT TaqMan Mm.PT.58.16320644 |
| as | CTG TTA TAG GTG GTT TCG TGG A | 8 | ||||
| CaV 1.2 exon1b | s | NM_001159533 | ATG GTC AAT GAA AAC ACG AGG ATG | 1 | (Cheng et al., 2007) | |
| as | GGA ACT GAC GGT AGA GAT GGT TGC | 234 | 2 | |||
| CD34 | as | NM_001111059 | GGT ACA GGA GAA TGC AGG TC | 119 | 2 | IDT Mm.PT.58.8626728 |
| s | NM_133654 | CGT GGT AGC AGA AGT CAA GT | 1 | |||
| Cspg4 (Ng2) | as | NM_139001 | CTT CAC GAT CAC CAT CCT TCC | 132 | 5 | IDT Mm.PT.58.29461721 |
| s | CCC GAA TCA TTG TCT GTT CCC | 6 | ||||
| - | - | - | - | - | - | |
| Vimentin | s | NM_011701 | CTG TAC GAG GAG GAG ATG CG | 249 | 1 | (Li et al., 2016) |
| as | AAT TTC TTC CTG CAA GGA TT | 3 | ||||
| Desmin | s | NM_010043 | GTG GAT GCA GCC ACT CTA GC | 218 | 3 | MGH Primer Bank ID 33563250a1 |
| as | TTA GCC GCG ATG GTC TCA TAC | 4 | ||||
| CD146 (Mcam) | s | NM_023061 | CCC AAA CTG GTG TGC GTC TT | 220 | 1 | MGH Primer Bank 10566955a1 |
| as | GGA AAA TCA GTA TCT GCC TCT CC | 3 | ||||
| KLF4 | s | NM_010637 | ATT AAT GAG GCA GCC ACC TG | 400 | 1 | (Majesky et al., 2017) |
| as | GGA AGA CGA GGA TGA AGC TG | 3 | ||||
| Ly6a (Sca1) | s | NM_001271416 | CTC TGA GGA TGG ACA CTT CT | 400 | 2 | (Majesky et al., 2017) |
| as | GGT CTG CAG GAG GAC TGA GC | 4 | ||||
| Gli1 | s | NM_01029 | ATC ACC TGT TGG GGA TGC TGG AT | 316 | 8 | (Kramann et al., 2015) |
| as | CGT GAA TAG GAC TTC CGA CAG | 10 | ||||
| CD29 (Itgb1) | s | NM_010578 | TCG ATC CTG TGA CCC ATT GC | 170 | 14 | NIH Primer Tool |
| as | AAC AAT TCC AGC AAC CAC GC | 15 | ||||
| CD105 (Endoglin) | s | NM_007932 | TGA GCG TGT CTC CAT TGA CC | 416 | 11 | NIH Primer Tool |
| as | GGG GCC ACG TGT GTG AGA A | 15 | ||||
| CD44 | as | NM_009851 | CAC CAT TTC CTG AGA CTT GCT | 148 | 19 | IDT Mm.PT.58.12084136 |
| s | TCT GAT TCT TGC CGT CTG C | 18 | ||||
| CD31 (Pecam1) | s | NM_008816 | CTG CCA GTC CGA AAA TGG AAC | 218 | 7 | MGH Primer Bank ID 6679273a1 |
| as | CTT CAT CCA CTG GGG CTA TC | 8 | ||||
| GJC1 (Connexin 45) | s | NM_008122 | GGT AAC AGG AGT TCT GGT GAA | 140 | 2 | IDT Mm.PT.58.8383900 |
| as | TCG AAA GAC AAT CAG CAC AGT | 3 | ||||
| Anoctamin 1 (TMEM16A) | s | NM_178642 | ggc att tgt cat tgt ctt cca g | 141 | 25 | IDT Real time primer tool |
| as | tcc tca cgc ata aac agc tc | 26 | ||||
| CD45 (Ptprc) | s | NM_001111316 | ATG CAT CCA TCC TCG TCC AC | 225 | 29 | NIH Primer Tool |
| as | TGA CTT GTC CAT TCT GGG CG | 31 | ||||
| MGH Harvard Primer Bank (Wang and Seed, 2003; Spandidos et al., 2008; Spandidos et al., 2010) | ||||||