Table 1.
Reference panel data resource.
| Dataset | Tissue | samples | Ancestry | Updated year | PMID | Link |
|---|---|---|---|---|---|---|
| GTEx | 54 tissues | 15,201 | White, AA, AS, Others | 2019 | 32913098 | https://gtexportal.org/ |
| TCGA | 67 tissues | 8094 | White, AA, AS, NA, Others | 2021 | - | https://portal.gdc.cancer.gov/;models available in http://gusevlab.org/projects/fusion/ |
| DGN | Whole Blood | 922 | EU | 2014 | 24092820 | https://explorer.nimhgenetics.org/ |
| METSIM | Adipose, Blood | 563 | Fins | 2010 | 28119442 | models available in http://gusevlab.org/projects/fusion/ |
| NTR | Blood | 5339 | Netherlands | 2014 | 20477721 | https://www.ncbi.nlm.nih.gov/gap/?term=phs000486.v1.p1 |
| YFS | Blood | 1264 | Fins | 2011 | 29985430 | models available in http://gusevlab.org/projects/fusion/ |
| CMC | Brain (DLPFC) | 452 | CAU, AA, Hispanic, EA | 2021 | 27668389 | https://www.synapse.org/ |
| eQTLGen Consortium | Blood, PBMC | 31,684 | EU, Others | 2020 | 34475573 | https://www.eqtlgen.org/ |
| GEU | LCL | 462 | CEU, Fins, Others | 2012 | 24037378 | https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-GEUV-1?query=E-GEUV-1 |
| BrainSeq | Brain (DLPFC) | 175 | CAU | 2015 | 26687217 | http://eqtl.brainseq.org/phase1/ |
| ROS/MAP | Brain (DLPFC) | 2091 | AA, Hispanic, Others | 2020 | 22471860; 22471867 | https://www.synapse.org/ |
| AD Knowledge Portal | Brain, Blood | 2573 | - | 2022 | 33085189 | https://adknowledgeportal.org/ |
| PsychENCODE | Brain | 2198 | - | 2015 | 26605881 | https://psychencode.synapse.org/ |
DLPFC dorsolateral prefrontal cortex, LCL lymphoblastoid cell line, PBMC peripheral blood mononuclear cell, AA African American, AS Asian, EU European, EA East Asian, FIN Finns, CAU Caucasian, NA Native American, CEU Central European.