Figure 3.

LDA identifies three topics in flow cytometry data

(A) Estimated weights (compositions) of clusters ${\beta }_k$ in single topics.

(B) Clusters with the top 10 highest lift for each topic. Clusters with top lift are identified as representative clusters for each topic.

(C) Sample topic proportions (${\theta }_{dk}$) within each patient sample collected at weeks 0, 3, and 6.