Table 1.
Positive selection sites using Datamonkey.
| Gene | Model | Number of positive selection sites (Location of sites) | Number of purfing selection sites | Location of identified positive selection sites | dN/dS |
|---|---|---|---|---|---|
| Rdrp | FEL | 3 (2, 691, 1353) | 1364 | 2, 671, 1353 | 0.0561 |
| FUBAR | 4 (2, 691, 1116, 1353) | 1805 | |||
| MEME | (2, 4, 68, 691, 1097, 1202, 1353, 1655, 1662, 1675, 1684, 1896, 1960, 2063) | – | |||
| SLAC | 3 (2, 691, 1353) | 1070 | |||
| Glycoprotein | FEL | 3 (22, 298, 404) | 566 | 22, 298, 404 | 0.108 |
| FUBAR | 3 (22, 37, 298) | 796 | |||
| MEME | 4 (13, 298, 404, 1018) | – | |||
| SLAC | 1 (298) | 433 | |||
| NP | FEL | – | 146 | – | 0.0479 |
| FUBAR | – | 188 | |||
| MEME | – | – | |||
| SLAC | – | 121 | |||
| NSs | FEL | 2 (9, 289) | 123 | 9, 289 | 0.1230 |
| FUBAR | 2 (9, 281, 289) | 172 | |||
| MEME | 2 (9, 289) | – | |||
| SLAC | 1 (289) | 86 |