REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
PE-conjugated Anti-Human IgA | Miltenyi Biotec | clone IS11-8E10 |
Biological Samples | ||
Human fecal samples from the OSCCAR cohort | (Sands et al., 2009) | N/A |
Blood samples from the OSCCAR cohort | (Sands et al., 2009) | N/A |
Critical Commercial Assays | ||
Buhlmann Calprotectin ELISA kit | Alpco Immunoassays | 30-CALPHU-E01 |
C-Reactive Protein | Prometheus Laboratories | N/A |
Deposited Data | ||
Raw data | This paper | 16S rRNA gene sequence data (NCBI) BioProject: PRJNA674841 |
Oligonucleotides | ||
16S rRNA Forward Primer for V4 region 515F: GTGCCAGCMGCCGCGGTAA | (Caporaso et al., 2012) | N/A |
16S rRNA Reverse Primer for V4 region 806R: GGACTACHVGGGTWTCTAAT | (Caporaso et al., 2012) | N/A |
Software and Algorithms | ||
QIIME v1.9.1 | (Caporaso et al., 2010) | http://qiime.org |
R v3.6.3 | (R Core Team, 2017) | https://www.r-project.org/ |
ggplot2 | (Wickham, 2016) | N/A |