Table 3.

Summary of genetic diversity and polymorphism analyses on full ORF and different gene regions of PPV strain T

Coding region	N	h	Hd	S	η	k	π	dS	dN	ω
Full ORF	51	51	1.000	1761	1862	163.673	0.017	0.061	0.004	0.066
P1	51	51	1.000	195	208	16.733	0.018	0.055	0.007	0.127
HC-Pro	51	51	1.000	279	301	25.605	0.019	0.068	0.004	0.059
P3	51	51	1.000	165	169	16.855	0.016	0.054	0.005	0.093
6K1	51	29	0.937	28	28	3.029	0.019	0.081	0.002	0.025
Cl	51	51	1.000	351	366	30.805	0.016	0.061	0.003	0.049
6K2	51	29	0.918	28	29	1.918	0.012	0.045	0.003	0.067
NIa-VPg	51	49	0.998	104	109	10.131	0.018	0.075	0.001	0.013
NIa-Pro	51	49	0.998	148	153	14.419	0.019	0.081	0.002	0.025
NIb	51	51	1.000	285	302	27.542	0.018	0.065	0.004	0.062
CP	51	51	1.000	178	197	16.637	0.017	0.041	0.009	0.219

N number of isolates, h number of haplotypes, Hd haplotype diversity, S number of variable sites, η total number of mutations, k average number of nucleotide differences between sequences, π nucleotide diversity (per site), dN non-synonymous nucleotide diversity, dS synonymous nucleotide diversity, ω = dN/dS