|
Experimental models
|
| CEN.PK (S. cerevisiae) |
PMID: 16254148 |
|
| MSP247 (S. cerevisiae) |
This study |
|
| MSP248 (S. cerevisiae) |
This study |
|
| X2180‐5A (S. cerevisiae) |
PMID: 3519363 |
|
|
Recombinant DNA
|
|
pFA6a‐kanMX6
|
PMID: 9717241 |
|
|
Antibodies
|
| Anti‐Pgk1p antibody, mouse monoclonal |
ThermoFisher |
459250 |
| Anti‐Rps6 p antibody |
Cell Signaling |
4858 |
| Goat Anti Mouse HRP antibody |
ThermoFisher |
31431 |
| Goat Anti Rabbit HRP antibody |
ThermoFisher |
31466 |
| Anti‐Sch9‐pT737, rabbit polyclonal |
PMID: 24514902 |
|
|
Oligonucleotides and sequence‐based reagents
|
| BAT1‐F1 (ACTACATGTTTTCGTTAGAATAAATCACCCTATAAACGCAAAATCAGCTAGAACCTTAGCATACTAAAACCGGATCCCCGGGTTAATTAA) |
This study |
|
| BAT1‐R1 (AACAGATCCTCTGAGAGGAATTCTCGTTTTTTTTTTTTGGGGGGGGAGGGGATGTTTACCTTCATTATCAGAATTCGAGCTCGTTTAAAC) |
This study |
|
| BAT2‐F1 (ATAAAAACAGACTAACTACTAAAATTTTAGAAATTTAAGGGAAAGCATCTCCACGAGTTTTAAGAACGATCGGATCCCCGGGTTAATTAA) |
This study |
|
| BAT2‐R1 (CTCAGTAGAAAAAACGCTCTAGTTTTATTCTTTTTAACTTTTAATTACTTTACGTAGCAATAGCGATACTGAATTCGAGCTCGTTTAAAC) |
This study |
|
| VIII:517387‐FWD (GGTACCGGCCTTTAAGCTTT) |
This study |
|
| VIII:518942‐REV (TGTGCCAAGTTGTTAGGTCA) |
This study |
|
| X:705443‐FWD (TCCCTCTCTGACACCTCTTG) |
This study |
|
| X:706939‐REV (TGACATGACCCCTTAACTCAGT) |
This study |
|
|
Chemicals, enzymes and other reagents
|
| G418 |
ThermoFisher |
11811023 |
| Ammonium sulfate |
Fisher Scientific |
BP212R‐1 |
| Dextrose [U‐13C] |
Cambridge Isotope Laboratories |
CLM‐1396‐5 |
| Dextrose |
Sigma‐Aldrich |
D9434 |
| Urea |
Sigma‐Aldrich |
U5378‐1KG |
| Cycloheximide |
Calbiochem |
239763‐M |
| Sodium fluoride |
Sigma‐Aldrich |
201154 |
| Phenylmethylsulfonyl fluoride |
Sigma‐Aldrich |
10837091001 |
| Sodium azide |
Sigma‐Aldrich |
S2002 |
| Tris(hydroxymethyl)aminomethane |
Sigma‐Aldrich |
252859 |
| Tris base |
Roche |
TRIS‐RO |
| Sodium chloride |
Sigma‐Aldrich |
S7653 |
| Magnesium chloride hexahydrate |
USP |
1374248 |
| DTT |
Sigma‐Aldrich |
D0632 |
| Sodium azide |
Sigma‐Aldrich |
S2002 |
| L‐Leucine |
Sigma‐Aldrich |
L8000 |
| L‐Isoleucine |
Sigma‐Aldrich |
I2752 |
| L‐Valine |
Sigma‐Aldrich |
V0500 |
| Sodium 4‐methyl‐2‐oxovalerate |
Sigma‐Aldrich |
K0629 |
| 3‐Methyl‐2‐oxopentanoic acid sodium salt |
Sigma‐Aldrich |
198978 |
| Sodium 3‐methyl‐2‐oxobutyrate |
Sigma‐Aldrich |
198994 |
| Trichloroacetic acid |
Sigma‐Aldrich |
T6399 |
| Acetone |
Sigma‐Aldrich |
179124 |
| Protease inhibitor tablets |
Roche |
4693159001 |
| Phosphatase inhibitor tabets |
Roche |
4906845001 |
| λ‐phosphatase |
New England Biolabs |
P0753S |
| Taq DNA polymerase |
New England Biolabs |
M0273L |
| Yeast extract |
Sigma‐Aldrich |
Y1625 |
| Peptone |
Sigma‐Aldrich |
P5905 |
| Yeast nitrogen base without amino acids and ammonium sulfate |
Fisher Scientific |
DF0335‐15‐9 |
| Bacteriological agar |
Sigma‐Aldrich |
A5306 |
| Glass beads |
Scientific Industries |
SI‐BG05 |
| Rapamycin |
Sigma‐Aldrich |
R8781 |
|
Software
|
| AccuComp Z2 |
Beckman Coulter |
383550 |
| ImageJ |
https://imagej.net/
|
RRID:SCR_003070 |
| Adobe Photoshop |
https://www.adobe.com/products/photoshop.html
|
RRID:SCR_014199 |
| RStudio |
http://www.rstudio.com/
|
RRID:SCR_000432 |
| SGD |
http://www.yeastgenome.org/
|
RRID:SCR_004694 |
| R |
https://www.r‐project.org
|
v3.6.3 RRID:SCR_001905 |