Table 3.
Variant Characteristics | Previously Reported Effect Estimate (Gorski et al.) | Cross-Ancestry Estimate from Current Meta-Analysis | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Identifier | Nearest Gene | Chr | Position | EA | OA | EAF | β a | P | EAF | β b | SEM | P | |
rs34882080 | UMOD-PDILT | 16 | 20361441 | A | G | 0.82 | 0.092 | 3.3×10−62 | 0.80 | −0.27 | 0.03 | 7.3×10−24 | |
rs77924615 | UMOD-PDILT | 16 | 20392332 | G | A | 0.80 | 0.099 | 3.8×10−69 | 0.78 | −0.30 | 0.03 | 4.9×10−27 | |
rs10254101 | PRKAG2 | 7 | 151415536 | T | C | 0.28 | 0.037 | 1.8×10−14 | 0.29 | −0.10 | 0.02 | 8.2×10−6 | |
rs1028455 | SPATA7 | 14 | 88829975 | T | A | 0.66 | 0.024 | 3.4×10−8 | 0.65 | −0.01 | 0.02 | 0.545 | |
rs1458038 | FGF5 | 4 | 81164723 | C | T | 0.69 | 0.028 | 6.9×10−10 | 0.70 | −0.09 | 0.02 | 4.1×10−5 | |
rs4930319 | OVOL1 | 11 | 65555458 | C | G | 0.33 | 0.028 | 5.3×10−10 | 0.35 | −0.03 | 0.02 | 0.098 | |
rs434215 | TPPP | 5 | 699046 | A | G | 0.28 | 0.032 | 7.2×10−9 | 0.30 | −0.07 | 0.02 | 4.8×10−3 | |
rs28857283 | C15ORF54 | 15 | 39224711 | G | A | 0.66 | 0.030 | 1.3×10−11 | 0.63 | −0.07 | 0.02 | 7.5×10−4 | |
rs13095391 | ACVR2B | 3 | 38447232 | A | C | 0.50 | 0.025 | 4.0×10−8 | 0.53 | −0.03 | 0.02 | 0.181 | |
rs9998485 | SHROOM3 | 4 | 77362445 | A | G | 0.47 | 0.027 | 9.8×10−9 | 0.50 | −0.05 | 0.02 | 0.014 | |
rs1047891 | CPS1 | 2 | 211540507 | A | C | 0.29 | 0.029 | 1.2×10−9 | 0.33 | −0.03 | 0.02 | 0.209 | |
rs2453533 | GATM | 15 | 45641225 | A | C | 0.42 | 0.029 | 1.7×10−11 | 0.40 | −0.02 | 0.02 | 0.412 |
Because of the differing phenotype definitions between the two studies, a positive regression β from the analysis by Gorski et al. indicates a faster eGFR decline, whereas in our analyses a negative β indicates a faster eGFR decline. EA, effect allele; OA, other allele; EAF, effect allele frequency; β, regression estimate, difference in % decline/yr per additional copy of the effect allele; SEM, standard error of the mean.
Difference in −1×eGFR decline, ml/min per 1.72 m2 per year, per copy of the effect allele, per Gorski et al. PMID 35716955.
Difference in the relative annual eGFR decline, %/yr, per copy of the effect allele.