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. 2023 Sep 6;13:14680. doi: 10.1038/s41598-023-40265-8

Table 5.

Molecular docking glid G-scoring, RMSD, interaction results of the investigated compounds towards VEGFR‐2 receptor (PDB ID: 1YWN).

Compounds Glid G-score RMSD Interaction Type Distance
Re-docked inhibitor  − 12.827 0.618 NH→GLU883 H-Bond 1.99, 2.23
NH2→GLU915 H-Bond 2.08
H2O→(C=N) H-Bond 2.46
ASP1044→(C=O) H-Bond 2.23
Doxorubicin  − 4.988 1.667 OH→ASP1026 H-Bond 1.98
OH→ASP1026 H-Bond 1.64
OH→ASN1031 H-Bond 2.46
AlA842→OH H-Bond 1.93
2e  − 2.862 1.313 GLU883--(N+–O) Salt bridge 3.41
Cl→GLU915 Halogen bond 3.09
CYS917→Cl Halogen bond 2.46
2f.  − 4.466 0.915 ARG1030→(N=O) H-Bond 1.95
ASN921→(N=O) H-Bond 2.34
4d  − 3.014 1.451 ARG840→(N=O) H-Bond 2.62
ARG1030--(N=O) Salt bridge 3.40
4c No interaction
2d  − 2.774 0.982 GLU883--(N+–O) Salt bridge 3.15
LYS866--Ar.ring π-cation 6.52
4b  − 3.637 1.331 LYS866--Ar. ring π-cation 3.15
GLU883--(N+–O) Salt bridge 3.23
ARG1030--(N=O) Salt bridge 3.91
LYS1053--(N=O) Salt bridge 4.38
2a  − 4.132 1.454 OH→H2O H-Bond 1.83
H2O→(P–O) H-Bond 1.97
PTR1052→(N=O) H-Bond 2.22
LYS1053→(N=O) H-Bond 2.74
2b  − 4.763 0.000 ASP1044→(C=N) H-Bond 2.40
OH→H2O→ASP1044 H-Bond via H2O molecule 1.86, 1.99
OH→H2O→GLU883 H-Bond via H2O molecule 1.86, 2.17
OH→H2O←LYS866 H-Bond via H2O molecule 1.86, 2.44
4a  − 4.303 1.077 OH→GLY844 H-Bond 2.09
NH→LEU838 H-Bond 2.74
ASP1026--(N+–O) Salt bridge 5.00
2c  − 2.798 1.289 GLU883--(N+–O) Salt bridge 3.41

Glide G-score: Kcal/mol, RMSD and distance: Å.