Table 5.
Molecular docking glid G-scoring, RMSD, interaction results of the investigated compounds towards VEGFR‐2 receptor (PDB ID: 1YWN).
| Compounds | Glid G-score | RMSD | Interaction | Type | Distance |
|---|---|---|---|---|---|
| Re-docked inhibitor | − 12.827 | 0.618 | NH→GLU883 | H-Bond | 1.99, 2.23 |
| NH2→GLU915 | H-Bond | 2.08 | |||
| H2O→(C=N) | H-Bond | 2.46 | |||
| ASP1044→(C=O) | H-Bond | 2.23 | |||
| Doxorubicin | − 4.988 | 1.667 | OH→ASP1026 | H-Bond | 1.98 |
| OH→ASP1026 | H-Bond | 1.64 | |||
| OH→ASN1031 | H-Bond | 2.46 | |||
| AlA842→OH | H-Bond | 1.93 | |||
| 2e | − 2.862 | 1.313 | GLU883--(N+–O) | Salt bridge | 3.41 |
| Cl→GLU915 | Halogen bond | 3.09 | |||
| CYS917→Cl | Halogen bond | 2.46 | |||
| 2f. | − 4.466 | 0.915 | ARG1030→(N=O) | H-Bond | 1.95 |
| ASN921→(N=O–) | H-Bond | 2.34 | |||
| 4d | − 3.014 | 1.451 | ARG840→(N=O) | H-Bond | 2.62 |
| ARG1030--(N=O–) | Salt bridge | 3.40 | |||
| 4c | No interaction | ||||
| 2d | − 2.774 | 0.982 | GLU883--(N+–O) | Salt bridge | 3.15 |
| LYS866--Ar.ring | π-cation | 6.52 | |||
| 4b | − 3.637 | 1.331 | LYS866--Ar. ring | π-cation | 3.15 |
| GLU883--(N+–O) | Salt bridge | 3.23 | |||
| ARG1030--(N=O–) | Salt bridge | 3.91 | |||
| LYS1053--(N=O–) | Salt bridge | 4.38 | |||
| 2a | − 4.132 | 1.454 | OH→H2O | H-Bond | 1.83 |
| H2O→(P–O) | H-Bond | 1.97 | |||
| PTR1052→(N=O) | H-Bond | 2.22 | |||
| LYS1053→(N=O) | H-Bond | 2.74 | |||
| 2b | − 4.763 | 0.000 | ASP1044→(C=N) | H-Bond | 2.40 |
| OH→H2O→ASP1044 | H-Bond via H2O molecule | 1.86, 1.99 | |||
| OH→H2O→GLU883 | H-Bond via H2O molecule | 1.86, 2.17 | |||
| OH→H2O←LYS866 | H-Bond via H2O molecule | 1.86, 2.44 | |||
| 4a | − 4.303 | 1.077 | OH→GLY844 | H-Bond | 2.09 |
| NH→LEU838 | H-Bond | 2.74 | |||
| ASP1026--(N+–O) | Salt bridge | 5.00 | |||
| 2c | − 2.798 | 1.289 | GLU883--(N+–O) | Salt bridge | 3.41 |
Glide G-score: Kcal/mol, RMSD and distance: Å.