Table 1.
Locus | ||||
Cytoband | 3q28/29 | 5q13 | 7q22 | 16q21 |
Bounds (r2 > 0.6) | chr3:190970484-193299693 | chr5:74704443-76506247 | chr7:99213680-111440525 | chr16:62294564-62303850 |
Width (r2 > 0.6) | 2.7 Mb | 6.1 Mb | 10.5 Mb | 9.2 kb |
N SNPs (r2 > 0.6) | 15 | 6 | 71 | 7 |
Bounds (D’ > 0.9) | chr3:187812688-195437973 | chr5:71732447-80465342 | chr7:100470502-107647081 | chr16:58087965-66459275 |
Width (D’ > 0.9) | 7.6 Mb | 8.7 Mb | 7.2 Mb | 8.4 Mb |
N SNPs (D’ > 0.9) | 207 | 538 | 1584 | 1405 |
Lead SNP | ||||
SNP | chr3:191857829:C:A | chr5:76339511:G:A | chr7:103511937:C:T | chr16:62294564:T:C |
rsID | rs192622352 | rs569742752 | rs117752843 | rs7185072 |
Amish MAF | 0.004 | 0.004 | 0.019 | 0.311 |
Beta | 0.66 | 0.74 | 0.28 | 0.08 |
Odds ratio | 26.6 | 45.5 | 5.1 | 2.0 |
P | 3.4e-8 | 5.4e-10 | 1.3e-8 | 2.7e-8 |
Aff/Unaff | 7/2 | 8/2 | 27/34 | 133/64 |
Relative risk | 6.4 (4.4–9.4) | 6.7 (4.8–9.3) | 4.0 (2.9–5.4) | 2.1 (1.6–2.8) |