REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
pCREB | Cell Signaling Technology | #9198 |
GRP78/BiP | Gifted from Dr. Y. Lian (NTU) | Not applicable. |
GAPDH | Proteintech | Cat#60004-1-Ig |
H3 | Cell Signaling Technology | Cat#9715 |
LaminB1 | Abcam | Cat#16048 |
FOS | Cell Signaling Technology | Cat#2250 |
GFP | Thermo Fisher Scientific | Cat#11122 |
GFP | NeuroMab | Cat#75-131 |
JUNB | Santa Cruz Biotechnology | Cat#8051 |
CUL4B | Sigma-Aldrich | Cat#011880 |
NEDD8 | St John’s Laboratory | Cat#115482 |
SUMO1 | Abcam | Cat#32058 |
SUMO2/3 | Proteintech | Cat#11251-1-AP |
SUMO-2/3 | Cell Signaling Technology | Cat#4971 |
CaMKIIβ/γ | St John’s Laboratory | Cat#91990 |
NACC1 | Santa Cruz Biotechnology | Cat#376216 |
GAD67 | Merk Millipore | Cat##5406 |
THAP11 | Proteintech | Cat#23030-1-AP |
MAP2 | PhosphoSolutions | Cat#1100 |
Alexa Fluor® 488 goat anti-mouse IgG (H + L) | Invitrogen | Cat#11001 |
Alexa Fluor® 555 goat anti-mouse IgG (H + L) | Invitrogen | Cat#21422 |
Alexa Fluor® 488 goat anti-rabbit IgG (H + L) | Invitrogen | Cat#11034 |
Alexa Fluor® 555 goat anti-rabbit IgG (H + L) | Invitrogen | Cat#21428 |
Alexa Fluor ® 647 goat anti-chicken IgY (H + L) | Invitrogen | Cat#21449 |
Goat anti-mouse light chain specific horseradish peroxidase (HRP)-conjugated |
EMD Millipore | Cat#AP200P |
Goat anti-rabbit IgG (H + L) HRP-conjugated | Bethyl Laboratories | Cat#A120-201P |
VeriBlot for IP detection reagent (HRP) | Abcam | Cat#131366 |
Chemicals, peptides, and recombinant proteins | ||
HBSS | Gibco | Cat#14170112 |
Trypsin | Life Technologies | Cat#15090046 |
DNAse | Sigma Aldrich | Cat#D5025 |
Trypsin Inhibitor | Sigma Aldrich | Cat#T9128 |
Neurobasal®-A medium | Gibco | Cat#10888022 |
Gentamycin | Gibco | Cat#15750045 |
FBS | Thermo Fisher Scientific | Cat#26140079 |
B27 | Gibco | Cat#17504044 |
GlutaMAXTM | Gibco | Cat#35050061 |
Poly-D-Lysine | Sigma Aldrich | Cat#P7886 |
1(S),9(R)-(−)-Bicuculline methiodide | Sigma Aldrich | Cat#14343 |
TTX | Tocris | Cat#1078 |
Scopolamine methyl nitrate | Sigma Aldrich | Cat#S2250 |
Pilocarpine hydrochloride | Sigma Aldrich | Cat#P6503 |
IGEPAL®-CA 630 | Sigma Aldrich | Cat#I8896 |
Dynabeads™ Protein G | Invitrogen | Cat#10-004-D |
SYPRO® Ruby | Molecular Probes | Cat#S11791 |
TRIzol™ Reagent | Invitrogen | Cat#15-596-018 |
PowerUpTM SYBRTM Green | Applied Biosystems | Cat#A25741 |
Critical commercial assays | ||
Pierce BCA Protein Assay Kit | Thermo Fisher Scientific | Cat#23227 |
PicoPure RNA isolation kit | Thermo Fisher Scientific | Cat#KIT0204 |
RevertAid First strand cDNA synthesis kit | Thermo Fisher Scientific | Cat#K1622 |
Deposited data | ||
Mass Spectometry data | ProteomeXchange via PRIDE | Accession ID: PXD030637 |
RNA-sequencesing data | Gene Expression Omnibus (GEO) | Accession ID: GSE205454 |
Experimental models: Organisms/strains | ||
Mice: B6; 129-Gt(ROSA)26Sortm5(CAG−Sun1/sfGFP)Nat/J | The Jackson Laboratory | Strain #021039 |
Mice: B6.Cg-Tg(CamkIIα-cre)T29−1Stl/J | The Jackson Laboratory | Strain #005359 |
Mice: C57BL6/J | The Jackson Laboratory via In Vivos Singapore | Strain #000664 |
Oligonucleotides | ||
Fos Forward: CACACAGGACTTTTGCGC Reverse: GACACGGTCTTCACCATTCC |
IDT | Generated internally, not applicable |
Hprt Forward: TGTTGTTGGATATGCCCTTG Reverse: GGCCACAGGACTAGAACACC |
IDT | Generated internally, not applicable |
Junb Forward: TCACGACGACTCTTACGCAG Reverse: CCTTGAGACCCCGATAGGGA |
IDT | Generated internally, not applicable |
Zfp108 Forward: GCCCATCAGAGAGTTCATACC Reverse: CCCACACTCCACACACATATAC |
IDT | Generated internally, not applicable |
Zfp128 Forward: CCCTGGATACTGCTCAACATAC Reverse: TCAGGGCTTCTCCATGTTAATAC |
IDT | Generated internally, not applicable |
Zfp493 Forward: CCAGAGAATTCACACAGGAGAG Reverse: GCTGTTTAAGGGTGGAGGAATA |
IDT | Generated internally, not applicable |
Zfp660 Forward: CAGGCAGACATCTCAGGTTATT Reverse: GTAACGATAAGCTCTCCCACAC |
IDT | Generated internally, not applicable |
Zkscan7 Forward: GTGGCTATGGTGGAGGATTT Reverse: CTCAGTGCTCCCATCTTCTTT |
IDT | Generated internally, not applicable |
Software and algorithms | ||
Image Lab | Bio-Rad | https://www.bio-rad.com/en-sg/product/image-lab-software?ID=KRE6P5E8Z |
Zen Blue | Zeiss | https://www.micro-shop.zeiss.com/en/us/softwarefinder/software-categories/zen-blue/ |
ImageJ v1.53c | Fiji-ImageJ | https://imagej.nih.gov/ij/ |
IMARIS v9.7.2 | Oxford Instruments | https://imaris.oxinst.com/ |
GraphPad Prism v9.1.2 | GraphPad | https://www.graphpad.com/features |
PANTHER v16 | PANTHER maintained by P. Thomas laboratory | http://www.pantherdb.org/ |
STRING v11 | STRING Consortium | https://string-db.org/ |
R v4.1.1 | R Foundation | https://www.r-project.org/ |
Cytoscape v3.8.2 | Cytoscape Team | https://cytoscape.org/ |