Table 2.
Isolate strain designations and antimicrobial resistance (AMR) genotypes found
|
Strain (PubMLST id) |
Accession (Biosample) |
MLST |
NG MAST v2.0 |
NG STAR (CC) |
Core genome group (Ng_cgc_300) |
CIP NEIS1320 (gyrA) and NEIS1525 (parC) |
AZM 23S rRNA and NEIS0149 (rpsA) |
TET NEIS2210 (tetM) |
BETA-LACTAMS NEIS0414 (ponA) NEIS1635 (mtrR) proNEIS1635 (mtrR promoter) NEIS1753 (penA) NEIS2020 (porB) NEIS2357 (blaTEM) |
|---|---|---|---|---|---|---|---|---|---|
|
NG 31052019 (117540) |
ERS14364953 (SAMEA112254100) |
1588 |
20 972 |
567 (CC309) |
21 |
NEIS1320 allele 234 (S91F; D95G) NEIS1525 allele 411 (S87N) |
23S rRNA allele 231 (WT) NEIS0149 allele 3 (WT) |
NEIS2210 allele 2 |
NEIS1753 allele 228 (F504L, non-mosaic, XIX) NEIS0414 allele 13 (L421P) NEIS2020 allele 4491 (PIB G120K; A121G) NEIS2357 allele 3 NEIS1635 allele 368 (internal stop codon) proNEIS1635 allele 6 (WT) |
|
NG 27082019 (117541) |
ERS14364954 (SAMEA112254101) |
13 781 |
3800 |
4860 (CC1054) |
498 |
NEIS1320-14 (S91F; D95G) NEIS1525-261 (WT) |
23S rRNA allele 521 (WT) NEIS0149 allele 3 (WT) |
NEIS2210 allele 2 |
NEIS1753 allele 21 (F504L and P551S, non-mosaic, XII) NEIS0414 allele 13 (L421P) NEIS2020 allele 966 (PIB, WT) NEIS1635 allele 18 (WT) proNEIS1635 allele 6 (WT) |
|
NG 20042303 (117543) |
ERS14364955 (SAMEA112254102) |
7363 |
1856 |
4931 (CC-) |
41 |
NEIS1320-234 (S91F; D95G) NEIS1525-2089 (S87N) |
23S rRNA allele 231 (WT) NEIS0149 allele 3 (WT) |
NEIS2210 allele 2 |
NEIS1753 allele 294 (F504L, non-mosaic, XIV) NEIS0414 allele 13 (L421P) NEIS2020 allele 4490 (PIA) NEIS2357 allele 3 NEIS1635 allele 875 (WT) proNEIS1635 allele 6 (WT) |
|
NG 14112003 (117547) |
ERS14364956 (SAMEA112254103) |
1588 |
20 975 |
3318 (CC-) |
21 |
NEIS1320-234 (S91F; D95G) NEIS1525-246 (S87N) |
23S rRNA allele 231 (WT) NEIS0149 allele 3 (WT) |
NEIS2210 allele 2 |
NEIS1753 allele 294 (F504L, non-mosaic, XIV) NEIS0414 allele 13 (L421P) NEIS2020 allele 4494 (PIA) NEIS1635 allele 16 (WT) proNEIS1635 allele 6 (WT) |
|
NG 14112002 (117546) |
ERS14364957 (SAMEA112254104) |
15 667 |
20 974 |
4861 (CC1054) |
498 |
NEIS1320-14 (S91F; D95G) NEIS1525-630 (WT) |
23S rRNA allele 521 (WT) NEIS0149 allele 3 (WT) |
NEIS2210 allele 2 |
NEIS1753 allele 285 (F504L and P551S, non-mosaic, IX) NEIS0414 allele 223 (WT) NEIS2020 allele 4493 (PIB, WT) NEIS2357 allele 3 NEIS1635 allele 18 (WT) proNEIS1635 allele 6 (WT) |
|
NG 13112001 (117545) |
ERS14364958 (SAMEA112254105) |
1599 |
20 973 |
463 (CC352) |
243 |
NEIS1320-19 (WT) NEIS1525-161 (WT) |
23S rRNA allele 495 (WT) NEIS0149 allele 3 (WT) |
NEIS2210 allele 2 |
NEIS1753 allele 294 (F504L, non-mosaic, XIV) NEIS0414 allele 8 (WT) NEIS2020 allele 4492 (PIB, WT) NEIS2357 allele 3 NEIS1635 allele 18 (WT) proNEIS1635 allele 6 (WT) |
AZM, azithromycin; CIP, ciprofloxacin; TET, tetracycline; beta-lactams, penicillin, ceftriaxone and cefixime. Alleles identified are depicted along with mutations.