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. 2023 Jul 31;51(16):e88. doi: 10.1093/nar/gkad629

Table 1.

FSMM parameters used to generate the artificial datasets. Furthermore, the MS2 sequence and elongation rate parameters were nseq = 1292 bp (24×MS2), npost = 4526 bp, Vpol = 45 bp × s−1 for D1–5 and D7–9,nseq = 5800 bp (128×MS2), npost = 8300 bp, Vpol = 67 bp × s−1 for D6 and D10–14. D1–5 and D7–9 parameters come from the study of Drosophila promoters in (20). D12–14 is based on estimates of HIV-1 transcription bursting in human cells studied in (19). D6 and D10–11 come from estimates of bursting from wild-type and mutated EEF1A promoters inserted in human cell lines

Dataset/Ref. Parameters
2 states k +[s−1] k [s−1] k ini [s−1]
D1 (20) 0.02036 0.00150 0.11432
D2 (20) 0.01117 0.00593 0.07637
D3 (20) 0.01189 0.01430 0.07745
D4 (20) 0.02439 0.00144 0.13397
D5 (20) 0.04169 0.00414 0.11277
D6 0.00484 0.00025 0.113
3 states M2 Inline graphic Inline graphic Inline graphic Inline graphic k ini [s−1]
D7 (20) 0.01426 0.00339 0.06553 0.05751 0.17102
D8 (20) 0.00661 0.00013 0.05772 0.01054 0.13201
D9 (20) 0.00332 5.3 × 10−5 0.05804 0.00586 0.13119
D10 0.0001 2.3 × 10−5 0.00091 0.00024 0.019
D11 0.00023 3.2 × 10−5 0.0011 0.00019 0.018
D12 (19) 0.0015 4.9 × 10−5 0.01 0.0043 0.17
D13 (19) 0.00015 0.00031 0.0012 0.0028 0.1
D14 (19) 6 × 10−5 0.00035 0.00089 0.003 0.063