| PPI | protein–protein interaction |
| HTVS | High-throughput virtual screening |
| DL | deep learning |
| AF2 | AlphaFold2 |
| RMSD | root mean square deviation |
| MSA | multiple sequence alignment |
| PDB | Protein Data Bank |
| ADCP | AutoDock CrankPep |
| PAE | predicted aligned error |
| pLDDT | predicted local distance difference test |
| AF2_v3 | alphafold2_multimer_v3 model |
| AF2_v2 | alphafold2_multimer_v2 model |
| AF2_ptm | alphafold2_ptm model |
| SASA | solvent accessible surface area |