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. 2023 Jul 10;160(3):223–251. doi: 10.1007/s00418-023-02209-1

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 11 — Visualization of a MERFISH mouse brain dataset [Allen Institute prototype MERFISH pipeline (Long et al. 2023)] via the napari-spatialdata plugin, featuring single-molecule transcripts (points) and their rasterized representation (image), polygonal ROIs, and annotated cells approximated as circles with variable radii. The dataset has been converted to OME-Zarr with the SpatialData APIs