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. 2023 Jul 10;160(3):223–251. doi: 10.1007/s00418-023-02209-1

Table 4.

List of software for generating OME-Zarr data in the order they are described below along with a brief description of their use

Generator Use Comment
bioformats2raw Command-line, Java Scriptable tool for integration into workflows
NGFF-Converter Windows, MacOS Graphical user-interface with a queue of files
ImSwitch Python Stream data from hardware
Kerchunk Python Preprocess non-Zarr files to simulate OME-Zarr

An up-to-date version of the table is maintained at https://ngff.openmicroscopy.org/tools and contributions are welcome