Table 4.
List of software for generating OME-Zarr data in the order they are described below along with a brief description of their use
Generator | Use | Comment |
---|---|---|
bioformats2raw | Command-line, Java | Scriptable tool for integration into workflows |
NGFF-Converter | Windows, MacOS | Graphical user-interface with a queue of files |
ImSwitch | Python | Stream data from hardware |
Kerchunk | Python | Preprocess non-Zarr files to simulate OME-Zarr |
An up-to-date version of the table is maintained at https://ngff.openmicroscopy.org/tools and contributions are welcome