Table 2.
Summarized statistical results of GWAS for 20 ear-related traits.
Traits | Site | SNP | Gene | Mean of PVE (%) | Range of PVE (%) |
---|---|---|---|---|---|
AKA | BJ | 15 | 12 | 5.13 | 4.76–5.73 |
SY | 9 | 7 | 5.17 | 4.74–5.68 | |
BLUP | 12 | 10 | 5.25 | 4.60–5.75 | |
BTA | BJ | 10 | 6 | 5.77 | 4.55–7.86 |
SY | 3 | 3 | 5.52 | 4.56–6.89 | |
BLUP | 8 | 6 | 5.84 | 3.98–7.01 | |
BTL | BJ | 19 | 15 | 5.01 | 4.02–6.63 |
SY | 4 | 5 | 5.29 | 4.80–6.46 | |
BLUP | 9 | 8 | 5.22 | 4.08–6.16 | |
EB | BJ | 13 | 17 | 4.87 | 3.78–6.97 |
SY | 82 | 31 | 7.82 | 5.1–15.69 | |
BLUP | 62 | 27 | 7.21 | 5.12–12.69 | |
EG | BJ | 45 | 20 | 6.34 | 4.82–9.73 |
SY | 148 | 84 | 8.43 | 5.12–24.17 | |
BLUP | 157 | 53 | 7.96 | 5.02–19.31 | |
EL | BJ | 7 | 5 | 4.81 | 4.29–5.67 |
SY | 7 | 6 | 5.58 | 5.38–5.77 | |
BLUP | 3 | 2 | 5.32 | 5.16–5.48 | |
EP | BJ | 0 | 0 | 0 | 0 |
SY | 8 | 5 | 5.37 | 5.00–6.22 | |
BLUP | 5 | 4 | 5.35 | 5.09–5.80 | |
ER | BJ | 66 | 22 | 7.23 | 4.48–11.97 |
SY | 247 | 95 | 8.75 | 5.11–24.09 | |
BLUP | 197 | 74 | 8.26 | 5.01–20.56 | |
ES | BJ | 22 | 16 | 5.45 | 4.30–6.18 |
SY | 15 | 14 | 5.1 | 4.33–6.91 | |
BLUP | 9 | 9 | 4.97 | 4.22–5.39 | |
ESA | BJ | 12 | 6 | 4.47 | 4.14–5.05 |
SY | 7 | 5 | 5.2 | 4.98–5.52 | |
BLUP | 6 | 2 | 5.49 | 5.07–5.73 | |
EV | BJ | 30 | 11 | 5.01 | 4.19–5.61 |
SY | 11 | 11 | 5.04 | 4.33–6.22 | |
BLUP | 9 | 5 | 5.5 | 5.09–6.21 | |
EW | BJ | 1 | 1 | 5.21 | 5.21 |
SY | 13 | 8 | 4.98 | 4.08–6.14 | |
BLUP | 7 | 5 | 5.21 | 5.02–5.51 | |
KB | BJ | 19 | 11 | 5.51 | 4.02–7.27 |
SY | 12 | 11 | 5.57 | 5.16–6.60 | |
BLUP | 17 | 12 | 5.96 | 5.03–8.44 | |
KG | BJ | 13 | 11 | 4.62 | 3.87–5.85 |
SY | 35 | 28 | 5.96 | 4.75–9.04 | |
BLUP | 14 | 9 | 5.91 | 5.22–7.62 | |
KNE | BJ | 5 | 6 | 5.06 | 4.68–6.16 |
SY | 18 | 11 | 5.44 | 4.62–6.81 | |
BLUP | 24 | 12 | 4.82 | 4.25–5.60 | |
KNR | BJ | 6 | 9 | 5.02 | 4.46–5.94 |
SY | 15 | 11 | 4.91 | 4.17–5.60 | |
BLUP | 5 | 5 | 5.59 | 4.92–6.05 | |
KR | BJ | 16 | 12 | 5.17 | 4.60–6.71 |
SY | 120 | 44 | 6.44 | 5.03–11.71 | |
BLUP | 105 | 40 | 6.38 | 6.91–11.49 | |
KT | BJ | 24 | 20 | 5.07 | 4.34–8.47 |
SY | 3 | 4 | 5.01 | 4.79–5.33 | |
BLUP | 9 | 8 | 4.82 | 4.41–5.38 | |
KW | BJ | 13 | 3 | 6.36 | 5.26–11.02 |
SY | 2 | 2 | 5.86 | 5.13–6.59 | |
BLUP | 2 | 3 | 5.87 | 5.82–5.91 | |
RNE | BJ | 15 | 9 | 5.07 | 4.10–5.77 |
SY | 12 | 3 | 5.51 | 4.56–6.13 | |
BLUP | 25 | 14 | 5.11 | 4.10–6.55 |
BJ, Beijing; SY, Sanya; BLUP, best linear unbiased prediction; PVE, the phenotypic variance explained by SNPs.