Table 1. Size and dimensionality d of the AGP and HMP datasets in Order, Family, and Genus taxonomic levels.
Initial (init.) dimensionality corresponds to raw data and processed (proc.) corresponds to data, after removing OTU found in less than 1% of the samples or with a standard deviation less than 0.001.
Dataset | Size | Order d | Family d | Genus d | |||
---|---|---|---|---|---|---|---|
init. | proc. | init. | proc. | init. | proc. | ||
AGP | 9511 | 168 | 39 | 258 | 69 | 535 | 108 |
HMP | 4587 | 179 | 39 | 267 | 70 | 574 | 97 |