Table 1.
Contextualizing reporting standards of PRSs for CHD
| Reporting framework for a CHD PRS | |
|---|---|
|
| |
| Metric | Contextual factors |
|
| |
| • Training data set • Tuning data set • Validation data set • Heritability • SNV heritability • HR for 1 SD increase in PRS • HR for top 5th percentile vs rest • AUC and R2 for PRS • AUC and R2 for clinical risk factors +PRS • Net reclassification index • Portability to non-European ancestry individuals |
• Definition of CHD • Case control ascertainment • Age dependent performance of PRS • Adjustment for relevant covariates • Inclusion of environmental factors/social determinants of health in risk models • Performance of PRS in different genetic ancestry groups and admixed individuals • QC procedures to enable PRS reporting for use in the clinical setting |
HR, hazard ratio; SD, standard deviation; AUC, area under the curve; R2, liability