Table 5.
GSEA of dataset GSE3678
| Description | setSize | enrichmentScore | NES | pvalue | p.adjust | qvalues |
|---|---|---|---|---|---|---|
| REACTOME_MET_ACTIVATES_PTK2_SIGNALING | 30 | 0.831027133 | 2.256766192 | 0.002183406 | 0.131651557 | 0.123347391 |
| REACTOME_NON_INTEGRIN_MEMBRANE_ECM_INTERACTIONS | 56 | 0.724471893 | 2.197933457 | 0.002222222 | 0.131651557 | 0.123347391 |
| REACTOME_DEGRADATION_OF_THE_EXTRACELLULAR_MATRIX | 138 | 0.609086629 | 2.186968164 | 0.002283105 | 0.131651557 | 0.123347391 |
| REACTOME_MET_PROMOTES_CELL_MOTILITY | 41 | 0.756019945 | 2.144310081 | 0.002325581 | 0.131651557 | 0.123347391 |
| PID_INTEGRIN1_PATHWAY | 65 | 0.662606559 | 2.101523027 | 0.002207506 | 0.131651557 | 0.123347391 |
| KEGG_ECM_RECEPTOR_INTERACTION | 81 | 0.634679082 | 2.091044287 | 0.00228833 | 0.131651557 | 0.123347391 |
| REACTOME_REGULATION_OF_INSULIN_LIKE_GROWTH_FACTOR_IGF_TRANSPORT_AND_UPTAKE_BY_INSULIN_LIKE_GROWTH_FACTOR_BINDING_PROTEINS_IGFBPS_ | 119 | 0.593328856 | 2.084846592 | 0.002325581 | 0.131651557 | 0.123347391 |
| REACTOME_ACTIVATION_OF_MATRIX_METALLOPROTEINASES | 31 | 0.759234987 | 2.075262843 | 0.002192982 | 0.131651557 | 0.123347391 |
| NABA_ECM_REGULATORS | 226 | 0.549420188 | 2.071691645 | 0.002380952 | 0.131651557 | 0.123347391 |
| REACTOME_SYNDECAN_INTERACTIONS | 25 | 0.782218088 | 2.046394931 | 0.002178649 | 0.131651557 | 0.123347391 |
| REACTOME_DEFENSINS | 24 | 0.778133951 | 2.021959202 | 0.002150538 | 0.131651557 | 0.123347391 |
| REACTOME_ASSEMBLY_OF_COLLAGEN_FIBRILS_AND_OTHER_MULTIMERIC_STRUCTURES | 61 | 0.64837202 | 2.002527836 | 0.002247191 | 0.131651557 | 0.123347391 |
| REACTOME_COLLAGEN_DEGRADATION | 64 | 0.621487987 | 1.963595331 | 0.002183406 | 0.131651557 | 0.123347391 |
| BIOCARTA_MHC_PATHWAY | 11 | 0.89217319 | 1.934279336 | 0.002114165 | 0.131651557 | 0.123347391 |
| PID_SYNDECAN_1_PATHWAY | 46 | 0.666268574 | 1.932009304 | 0.002331002 | 0.131651557 | 0.123347391 |
GSEA Gene set enrichment analysis