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. 2023 Jan 31;19(1):79–84. doi: 10.6026/97320630019079

Table 1. Molecular docking interaction of the diazole-thiole compounds (1-6) against factor H binding protein of Treponema denticola (PDB ID: 3qz0).

Ligands Docking scores/Affinity (kcal/mol) H-bond Amino Acid Residual interactions
Hydrophobic/Pi-Cation Van dar Waals
1 -7.1 GLU-66 ILE-63, ALA-41, MSE-59, GLU-45 ARG-49, GLU-62, PHE-38
2 -7 GLU-62 MSE-59, ALA-41, HIS-34, LYS- 37, ALA-55 ASP-58, ARG-49, LEU-42, PHE-38, ILE-63, GLU-66
3 -6.7 GLU-62 ILE-63, MSE-59, GLU-45, ALA-41, LYS-37, HIS-34 PHE-38
4 -6.9 ILE-63, ALA-41, ILE-51, MSE-59 PHE-38, ARG-49, GLU-45, LEU-42
5 -7.1 GLU-66, ALA-55, ALA-41 ILE-63, MSE-59, ARG-49, GLU-45, ILE-51 LEU-42, PHE-38
6 -7.3 GLU-66 MSE-59, GLU-45, ALA-41, ILE-63 GLU-62, ARG-49, PHE-38
Azithromycin 3.8 ALA-41 MSE-59, GLU-66 ALA-55, LEU-42, ARG-49, ILE-51, GLU-62, GLU-45, ASN-44, LYS-37, HIS-34, ILE-63, PHE-38
Sulfanilamide -4.4 LYS-37, MSE-59, GLU-62 ILE-63 GLU-66, ALA-41, HIS-34
Sulfamethoxazole -5.6 ALA-55 MSE-59, LYS-37, ILE-63, ALA-41 LEU-42, GLU-45, PHE-38