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. 2023 Jan 31;19(1):105–110. doi: 10.6026/97320630019105

Table 1. Molecular docking scores and residual amino acid interactions of Oxazole compounds (1-5) against heme-binding protein Hmu Y of Porphyromonas gingivalis (PDB ID: 3H8T).

Ligands Docking scores/Affinity (kcal/mol) H-bond Amino Acid Residual interactions
Hydrophobic/Pi-Cation Van dar Waals
1 -10 Arg-79 Lys-204, Asp-81, Lys-151, Ala-157, Met-136 Arg-122, Thr-124, Leu-202, Lys-203, Gly-155
2 -11.3 Thr-148, Thr-124, Asp-81, Tyr-48, Met-136 His-166, His-134, Ala-157, Tyr-127, Tyr-80, Phe-164, Pro-171 Lys-151, Arg-79
3 -9.6 Lys-151 Tyr-80, Phe-164, Ala-157, Arg-79, His-134, Pro-171, Tyr-127 Leu-162, Thr-148, Asp-81, Thr-124, Met-136
4 -10 Lys-151 Pro-171, His-166, His-134, Met-136, Phe-164, Ala-157, Tyr-80 Met-129, Thr-124, Asp-81, Thr-148, Leu-162, Tyr-173
5 -9.4 Lys-151 Tyr-127, Pro-171, His-166, His-134, Ala-157, Tyr-80, Phe-164 Met-136, Met-129, Thr-124, Thr-148, Leu-162
Amoxicillin -8.6 Tyr-173, Arg-79, Tyr-80, Asp-81 Pro-171 His-78, Ala-157, Lys-151, Thr-124, Tyr-48, Tyr-127, His-166, His-134, Met-129
Moxifloxacin -8.6 Gln-154, Arg-122 His-134, Phe-164, Met-136, Pro171, Lys-204 Gly-155, Thr-124, Tyr-48, Tyr-80, His-166, Phe-156
Sulfanilamide -6 Tyr-48, Thr-124, Asp-81 Arg-79 His-78, Arg-122, Lys-151, Tyr-80
Sulfamethoxazole -8.1 Gly-155, Lys-151, Thr-124, Tyr-48, Leu-162, Phe-164, Ala-157, Tyr-80 Asp-81, Arg-122, Arg-79, Tyr-127