Table 1.
Genome assembly and annotation statistics of JUJUNCAO
| Assembly | Initial assembly | Purge haplotigs | Hi-C |
|---|---|---|---|
| Total assembly size of contigs (bp) | 2 131 895 497 | 1 986 757 443 | – |
| Number of contigs | 815 | 116 | – |
| Contig N50 (bp) | 131 346 082 | 134 074 806 | – |
| Contig N90 (bp) | 94 754 406 | 99 768 082 | – |
| Longest contig (bp) | 168 262 481 | 162 376 048 | – |
| GC content (%) | 47.11 | 47.11 | 47.11 |
| BUSCO completeness of assembly (%) | – | 98.40 | – |
| LAIa | – | 15.90 | – |
| Length of chromosomes (bp) | – | – | 1 966 989 277 |
| Number of chromosomes | – | – | 14 |
| Number of gaps | – | – | 13 |
| Anchored rate (%) | – | – | 99.00 |
| Annotation | – | – | – |
| Percentage of repeat elements | 73.38 | – | – |
| Total number of genes | 68 526 | – | – |
| BUSCO completeness of annotation (%) | 93.00 | – | – |
| Subgenome | A subgenome | B subgenome | – |
| Length of chromosomes (bp) | 899 693 551 | 1 067 295 726 | – |
| Number of chromosomes | 7 | 7 | – |
| Number of genes | 34 630 | 33 779 | – |
a
LAI was used to assess genome assembly quality.