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. Author manuscript; available in PMC: 2023 Sep 19.
Published in final edited form as: Cell Rep. 2023 Jul 27;42(8):112896. doi: 10.1016/j.celrep.2023.112896

KEY RESOURCES TABLE.

REAGENT or RESOURCE SOURCE IDENTIFIER
Deposited data
UKB demographic, clinical, genotype and neuroimaging data UK Biobank version 3 https://www.ukbiobank.ac.uk/
ABCD demographic, genotype and neuroimaging data ABCD data repository https://nda.nih.gov/abcd/
BrainSpan developmental brain transcriptomic data BrainSpan (Tebbenkamp et al.)29 http://brainspan.org/static/download.html
Human inversion data Human Polymorphic Inversion Database (Martínez-Fundichely et al.)34 http://invfestdb.uab.cat/
Human inversion data Human Genome Structural Variation Consortium (Ebert et al.)4 https://www.internationalgenome.org/human-genome-structural-variation-consortium
PPMI DNA and RNA sequencing data Parkinson’s Progression Markers Initiative (PPMI) database (Simuni et al.)80 https://www.ppmi-info.org/access-data-specimens/download-data/
Software and algorithms
R 4.0.2 R https://cran.r-project.org/
scoreInvHap development version Bioconductor https://bioconductor.org/packages/release/bioc/html/scoreInvHap.html/
imputeinInversion scripts Github https://github.com/isglobal-brge/imputeInversion
seurat version 4.1.0 GIthub https://github.com/satijalab/seurat
GCTA version 1.93.2 beta Linux Yang Lab https://yanglab.westlake.edu.cn/software/gcta/
SMR version 1.03 Yang Lab https://yanglab.westlake.edu.cn/software/smr
Genome table browser UCSC Genome Browser https://genome.ucsc.edu/cgi-bin/hgTables