Key resources table
| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Antibodies | ||
| Anti-cFos (rabbit) | Cell Signalling | Cat#2250, RRID: AB_2247211 |
| Anti-GFP (chicken) | Abcam | Cat#AB13970, RRID: AB_300798 |
| Anti-TH (chicken) | Abcam | Cat#AB76442, RRID: AB_1524535 |
| Anti-RFP (rabbit) | Rockland Antibodies | Cat#600-401-379, RRID: AB_2209751 |
| Anti-RFP (guinea pig) | Synaptic Systems | Cat# 390 004, RRID: AB_2737052 |
| Anti-Serotonin transporter (rabbit) | Millipore Sigma | Cat#AB9726, RRID: AB_612176 |
| Bacterial and virus strains | ||
| CAV-cre | Plateforme de Vectorologie de Montpellier, IGMM (Soudais et al., 2001) | Cat# CAV2-cre |
| CAV2-Flp | Plateforme de Vectorologie de Montpellier, IGMM | Cat# CAV2-Flp |
| AAV8-hSyn-DIO-hM4D(Gi)-mCherry | Addgene (Krashes et al., 2011) | RRID:Addgene_44362 |
| AAV8-hSyn-DIO-mCherry | Addgene | RRID:Addgene_50459 |
| AAV1. Syn.GCaMP6f.WPRE.SV40 | Addgene (Chen et al., 2013) | RRID: Addgene_100837 |
| AAV8-hSyn-DIO-EGFP | Addgene | RRID: Addgene_50457 |
| AAV8- Ef1a-fDIO DREADD Gi-mCherry | Neuroscience Gene Vector and Virus Core at Stanford | Cat#GVVC-AAV-171 |
| AAV8-Ef1a-fDIO-mCherry-WPRE | Neuroscience Gene Vector and Virus Core at Stanford | Cat#GVVC-AAV-155 |
| AAV1-Ef1a-fDIO EYFP | Addgene (Fenno et al., 2014) | RRID:Addgene_55641 |
| AAV1.hSyn.Cre.WPRE.hGH | Addgene | RRID:Addgene_ 105553 |
| AAV-EF1a-DIO-eArch3.0-EYFP | UNC vector core | N/A |
| AAV5-EF1a-DIO-OptoD1-EYFP | UNC vector core (Gunaydin et al., 2014) | N/A |
| AAV-9/2-HSYN 1-CHL-DLOX-M TAGBFP _2A_HM4D(GI)_RNRX1B(REV)-DLOX-WPRE-SV40 | University of Zurich (Stachniak et al., 2014, Doron et al., 2020) | Cat# v557–9 |
| Chemicals, peptides, and recombinant proteins | ||
| Clozapine-N-Oxide | Tocris | Cat#4936 |
| Super-glue | Loctite | Cat#45198 |
| Dental Cement | Lang Dental | Cat#1223CLR |
| C&B Metabond Quick Adhesive | Parkell Inc. | Cat#S380 |
| SCH23390 | Tocris | Cat#0925 |
| Propranolol | Tocris | Cat#0624 |
| Green and Red Retrobeads™ IX | Lumafluor Inc. | SKU: XN-GRN-RTR-IX SKU: XN-RED-RTR-IX |
| Deposited data | ||
| Computational Model | Kastellakis et al., 2016 | ModelDB database Accession Number 267173 |
| Raw data of quantifications | This paper Main and supplemental figures | Chowdhury, Ananya (2021), “A Locus Coeruleus- dorsal CA1 dopaminergic circuit modulates memory linking. Chowdhury et al.”, Mendeley Data, V1, doi: 10.17632/mrk7355wtk.1 |
| Experimental models: Organisms/strains | ||
| Black 6 Wild type | Taconic Farms | C57BL/6NTac |
| TH-cre | Jackson laboratories | JAX:8601, strain name: B6.Cg-Tg(TH-Cre)1Tmd/J) |
| Software and algorithms | ||
| MATLAB 2017 | Mathworks | https://www.mathworks.com/ |
| Automated Freezing | Med Associates INC (Video Freeze®” Software) | https://www.med-associates.com/product/video-fear-conditioning/ |
| Imaris 9.2.0 | Bitplane AG | www.bitplane.com/imaris/imaris |
| Prism 9.0.2 | GraphPad Software, La Jolla | https://www.graphpad.com/scientific-software/prism/ |
| pClamp 10 software | Molecular Devices | https://www.moleculardevices.com/products/axon-patch-clamp-system/acquisition-and-analysis-software/pclamp-software-suite |
| Stimfit 0.15.8 | (Guzman, et. al, 2014) | https://github.com/neurodroid/stimfit |
| NoRMCorre | Pnevmatikakis and Giovannucci, 2017 | https://github.com/flatironinstitute/NoRMCorre |
| CNMF-E | Zhou et. al, 2018 | https://github.com/zhoupc/CNMFE |
| ConcatMiniscope Pipeline | https://doi.org/10.5281/zenodo.5676164 | https://github.com/Almeida-FilhoDG/ConcatMiniscope |
| iDTracker | (Perez-Escudero et al., 2014) | http://www.idtracker.es/ |
| Other | ||
| Microendoscope | UCLA Miniscope | http://miniscope.org |
| Nanoject II | Fisher Scientific | Cat#13 681 455 |
| Nanoject Controller | World Precision Instrument | Cat#SYS-MICRO4 |
| Guide Cannula | Plastics One | Cat#C313GS-5/SPC |
| Internal Cannula | Plastics One | C313IS-5/SPC |
| Fiber Optic Cannula | Newdoon Inc. | Model#FOC-W-1.25-200-0.37-3.0 |
| Grin lens | Edmund Optics | Cat#64-519 |