Table 1. Genome data for Apamea sordens, ilApaSord1.1.
| Project accession data | ||
|---|---|---|
| Assembly identifier | ilApaSord1.1 | |
| Species | Apamea sordens | |
| Specimen | ilApaSord1 | |
| NCBI taxonomy ID | 689061 | |
| BioProject | PRJEB54051 | |
| BioSample ID | SAMEA10166870 | |
| Isolate information | male; thorax (PacBio sequencing), head (Hi-C) | |
| Assembly metrics * | Benchmark | |
| Consensus quality (QV) | 72.1 | ≥ 50 |
| k-mer completeness | 100% | ≥ 95% |
| BUSCO ** | C:98.9%[S:98.4%,D:0.5%], F:0.2%,M:0.9%,n:5,286 | C ≥ 95% |
| Percentage of assembly mapped to
chromosomes |
100% | ≥ 95% |
| Sex chromosomes | Z chromosome |
localised
homologous pairs |
| Organelles | Mitochondrial genome assembled |
complete single
alleles |
| Raw data accessions | ||
| PacificBiosciences SEQUEL II | ERR9924612 | |
| Hi-C Illumina | ERR9930687 | |
| Genome assembly | ||
| Assembly accession | GCA_945859715.1 | |
| Accession of alternate haplotype | GCA_945859755.1 | |
| Span (Mb) | 614.3 | |
| Number of contigs | 35 | |
| Contig N50 length (Mb) | 21.0 | |
| Number of scaffolds | 31 | |
| Scaffold N50 length (Mb) | 21.3 | |
| Longest scaffold (Mb) | 32.5 | |
* Assembly metric benchmarks are adapted from column VGP-2020 of “Table 1: Proposed standards and metrics for defining genome assembly quality” from ( Rhie et al., 2021).
** BUSCO scores based on the lepidoptera_odb10 BUSCO set using v5.3.2. C = complete [S = single copy, D = duplicated], F = fragmented, M = missing, n = number of orthologues in comparison. A full set of BUSCO scores is available at https://blobtoolkit.genomehubs.org/view/ilApaSord1.1/dataset/ilApaSord1_1/busco.