TABLE 2.
Oligonucleotide primers used for amplification and sequencing of 16S rDNA
| Primer | Sequence (5′ to 3′) | Positiona |
|---|---|---|
| TPU1 | AGA GTT TGA TCM TGG CTC AG | EC8–27 |
| TPU2 | CCA RAC TCC TAC GGG AGG CA | EC334–353 |
| TPU3 | CAG CMG CCG CGG TAA TWC | EC519–536 |
| TPU4 | GGA TTA GAT ACC CTG GTA GTC C | EC785–806 |
| TPU5 | AAA CTY AAA KGA ATT GAC GG | EC907–926 |
| TPU6 | GGG CKA CAC ACG TGC TAC AAT | EC1220–1240 |
| RTU2 | TGC CTC CCG TAG GAG TYT GG | EC334–353 |
| RTU3 | GWA TTA CCG CGG CKG CTG | EC519–536 |
| RTU4 | TAC CAG GGT ATC TAA TCC TGT T | EC781–802 |
| RTU5 | CCG TCA ATT CMT TTR AGT TT | EC907–926 |
| RTU6 | ATT GTA GCA CGT GTG TMG CCC | EC1220–1240 |
| RTU8 | AAG GAG GTG ATC CAK CCR CA | EC1525–1544 |
Numbering is based upon Escherichia coli sequence.