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. Author manuscript; available in PMC: 2023 Sep 20.
Published in final edited form as: Nat Methods. 2022 Apr 1;19(6):705–710. doi: 10.1038/s41592-022-01457-8

Figure 3:

Figure 3:

False negative and false positive rates achieved by SV calls of four mapping methods: Winnowmap2, Winnowmap, minimap2 and NGMLR. The top two plots show accuracy statistics over T2T chromosomes 8 and X whereas the bottom two plots show the statistics within only the most repetitive intervals of these chromosomes. Winnowmap2 alignments enabled the most accurate Sniffles SV calls with the least FNR and FPR scores. Note that y-axis scales differ in these plots.