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. Author manuscript; available in PMC: 2023 Sep 20.
Published in final edited form as: Nat Methods. 2022 Apr 1;19(6):705–710. doi: 10.1038/s41592-022-01457-8

Figure 5:

Figure 5:

Comparison of Winnowmap2 and minimap2 by using GIAB SV benchmark set defined for HG002 human sample. Current GIAB benchmark set (v0.6) excludes complex repeats of the human genome. Outside the repeats, Winnowmap2 achieves similar FNR scores and slightly better FPR scores compared to minimap2.