Table 2.
Number of genomic sequences positive for ARGs and AMR relevant point mutations, divided by antimicrobial classes.
| Antimicrobial class | ARG namea | Number of genomic sequences positive for the ARG* |
|---|---|---|
| Aminoglycosides | aadA1 | 1 |
| aadA2 | 5 | |
| aph(3″)-Ib (strA) | 19 | |
| aph(6)-Id (strB) | 19 | |
| aph(3′)-Ia | 5 | |
| aac(3)-IId | 2 | |
| aadA5 | 1 | |
| aac(3)-IV | 1 | |
| aph(4)-Ia | 1 | |
| ant(3″)-Ia | 2 | |
| aac(3)-Id | 1 | |
| aadA7 | 1 | |
| ant(2″)-Ia | 1 | |
| β-lactams | bla TEM-1A | 1 |
| bla TEM-1B | 16 | |
| bla CARB-2 | 2 | |
| bla OXA-10 | 1 | |
| bla CTX-M-1 | 1 | |
| bla TEM-1D | 1 | |
| Phenicol | catA1 | 3 |
| floR | 6 | |
| (Fluoro)quinolones | gyrA (S83Y) | 3 |
| parC (T57S) | 39 | |
| gyrA (D87N) | 3 | |
| gyrA (D87Y) | 1 | |
| gyrA (S83F) | 5 | |
| gyrA (D87G) | 4 | |
| qnrB19 | 5 | |
| qnrD1 | 2 | |
| qnrS1 | 1 | |
| Sulphonamides | sul1 | 11 |
| sul2 | 13 | |
| Trimethoprim | dfrA1 | 1 |
| dfrA12 | 1 | |
| dfrA17 | 1 | |
| dfrA14 | 5 | |
| Lincosamides and macrolides | lnuG | 1 |
| mphA | 1 | |
| Tetracyclines | tetA | 18 |
| tetB | 11 | |
| tetG | 2 | |
| tetD | 2 | |
| Fosfomycin | fosA7 | 1 |
aChromosomal point mutations conferring resistance to antimicrobials are reported in brackets. *Some genomic sequences contained more than one ARG, conferring resistance to the same antimicrobial class.