TABLE 1.
Reference strains and clinical isolates used in the present study
Strain | Genomic speciesa | Species name | Strain codec | Outbreakd | Specimen | Reference |
---|---|---|---|---|---|---|
1 | 1 | A. calcoaceticus | ATCC 23055 | No | 6 | |
2 | 2 | A. baumannii | ATCC 19606 | No | 6 | |
3 | 3 | UNb | ATCC 19004 | No | 6 | |
4 | 4 | A. haemolyticus | ATCC 17906 | No | 6 | |
5 | 5 | A. junii | ATCC 17908 | No | 6 | |
6 | 6 | UN | ATCC 17979 | No | 6 | |
7 | 7 | A. johnsonii | ATCC 17909 | No | 6 | |
8 | 8 | A. lwoffii | NCTC 5866 | No | 6 | |
9 | 10 | UN | ATCC 17924 | No | 6 | |
10 | 11 | UN | ATCC 11171 | No | 6 | |
11 | 12 | A. radioresistens | IAM 13186 | No | 6 | |
12 | 13 | UN | ATCC 17903 | No | 29 | |
13 | 14 | UN | ATCC 17905 | No | 29 | |
14 | 15 | UN | MGH 98795 | No | 29 | |
15 | BJ14 | UN | CCUG 14816 | No | 9 | |
16 | BJ15 | UN | Adam Ac 606 | No | 9 | |
17 | BJ16 | UN | ATCC 17988 | No | 9 | |
18 | BJ17 | UN | SEIP Ac 87.314 | No | 9 | |
19 | 2 | A. baumannii | HK 20 | A-1 | Skin | 21 |
20 | 2 | A. baumannii | HK 70 | A-2 | Sputum | 21 |
21 | 2 | A. baumannii | HK 71 | A-3 | Wound | 21 |
22 | 2 | A. baumannii | HK 72 | A-4 | Wound | 21 |
23 | 2 | A. baumannii | HK 73 | A-5 | Urine | 21 |
24 | 3 | UN | HK 74 | No | Blood | |
25 | 2 | A. baumannii | HK 75 | No | Rectum | |
26 | 2 | A. baumannii | HK 76 | No | Sputum | |
27 | 2 | A. baumannii | HK 77 | No | Rectum | |
28 | 2 | A. baumannii | HK 21 | R-1 | Urine | 11 |
29 | 2 | A. baumannii | HK 22 | D-1 | Urine | 11 |
30 | 2 | A. baumannii | HK 23 | U-1 | Sputum | 11 |
31 | 2 | A. baumannii | HK 24 | E-1 | Bronchus | 11 |
Numbered according to the work of Bouvet and Grimont (5) for groups 1 to 12, according to the work of Tjernberg and Ursing (29) for groups 13 to 15, and according to the work of Bouvet and Jeanjean (6) for groups BJ14 to BJ17. Group 14 is identical to BJ13.
UN, unnamed genomic species.
CCUG, Culture Collection, University of Göteborg, Göteborg, Sweden; IAM, Institute of Applied Microbiology, The University of Tokyo, Tokyo, Japan; MGH, Collection of Malmö General Hospital, Malmö, Sweden; SEIP, Service des Entérobactéries de l’Institut Pasteur, Paris, France.
No, epidemiologically unrelated isolate; 1 to 5, outbreak number in Dutch cities: Amsterdam (A), Rotterdam (R), Dordrecht (D), Utrecht (U), or Enschede (E).