Table 3.
Performance of methods as measured by the average AUROC from each of the negative-control settings
| Method | Mean AUROC negative-1 |
Mean AUROC negative-2 |
Delta AUROC |
|---|---|---|---|
| BERT-RBP | 0.8927 | 0.8112 | –0.0815 |
| Pysster-101 | 0.9003 | 0.8311 | –0.0692 |
| PRISMNet | 0.9015 | 0.8255 | –0.0760 |
| Pysster | 0.9190 | 0.8497 | –0.0693 |
| DeepRAM | 0.8697 | 0.8029 | –0.0668 |
| DeepCLIP | 0.8733 | 0.8081 | –0.0652 |
| iDeepS | 0.8932 | 0.8285 | –0.0647 |
| RNAProt-Extended | 0.9419 | 0.8569 | –0.0850 |
| GraphProt | 0.8211 | 0.7756 | –0.0455 |
| DeepRiPe | 0.9103 | 0.8774 | –0.0329 |
| Multi-resBind | 0.9174 | 0.8825 | –0.0349 |
| MultiRBP | NA | 0.7937 | NA |