Table 2.

The performance comparison of GraphCpG with other methods on different datasets.^a

Dataset	Cell number	AUROC				MCC score
			Deep learning				Deep learning
		CaMelia	DeepCpG	CpG Transformer	GraphCpG	CaMelia	DeepCpG	CpG Transformer	GraphCpG
HCC	25	97.11	96.01	97.56	96.99	83.32	78.71	84.43	81.61
MBL	30	89.36	87.12	92.05	89.73	63.17	60.09	70.58	64.71
Hemato	122	87.68	88.26	89.56	89.77	69.04	67.96	68.15	69.05
Neuron-Mouse	690	91.13	88.59	90.87	91.75	71.05	66.52	70.77	71.1
Neuron-Homo	780	92.98	90.06	92.31	93.2	75.01	73.85	75.15	75.24

^aBold numbers indicate the best performance.