Table 2.
Significant associations of DMRs and metabolite levels, sorted by DMR-type (context) at T = 16 °C
| Chromo some | Position | Metabolite | DMR | Genes in <2 kb vicinity | Q values (FDR) | |
|---|---|---|---|---|---|---|
| SNkin | DMRkin | |||||
| 4 | 5038897 | Alanine | C_DMR | AT4G08108 (TE) | 0.033 | 0.032 |
| 4 | 8189392 | Glutamine | C_DMR | AT4G14200 (pentatricopeptide repeat superfamily protein), AT4G14210 (phytoene dehydrogenase) | 0.004 | 0.003 |
| 4 | 2170845 | Malic acid | CG_DMR | AT4G04405 (TE) | 0.016 | 0.021 |
| 5 | 12392130 | Malic acid | CG_DMR | AT5G32690 (pseudogene), AT5G32975 (TE) | 0.016 | 0.021 |
| 4 | 7830616 | Threonine | CH_DMR | AT4G13470 (TE) | 0.024 | 0.018 |
“SNPkin” and “DMRkin” q values refer to significance levels achieved using either genomic SNP-based or DMR-based kinship matrices. FDR, false discovery rate (q values, applied per metabolite and condition [T and DMR context]); TE, transposable element gene.