Skip to main content
. 2023 Sep 14;12:e85690. doi: 10.7554/eLife.85690

Table 3. Primers and oligonucleotides used in this study.

Primer/oligo Description Sequence
SsrB_His28A_FP SsrB: substituting His28 to A TTACCCTGGCCTGCCTTTAAAATTGTA
SsrB_His28A_RP SsrB: substituting His28 to A TACAATTTTAAAGGCAGGCCAGGGTAA
SsrB_His34A_FP SsrB: substituting His34 to A TTTAAAATTGTAGAGGCGGTTAAAAATGGTCTT
SsrB_His34A_RP SsrB: substituting His34 to A AAGACCATTTTTAACCGCCTCTACAATTTTAAA
SsrB_His72A_FP SsrB: substituting His72 to A ATTCCTCAATTAGCACAGCGTTGGCC
SsrB_His72A_RP SsrB: substituting His72 to A GGCCAACGCTGTGCTAATTGAGGAAT
SsrB_H12N_FP SsrB: substituting His12 to N TTAGTAGACGATAATGAAATCATCA
SsrB_H12N_RP SsrB: substituting His12 to N GATGATTTCATTATCGTCTACTAATAA
SsrB_H12K_FP SsrB: substituting His12 to K TTAGTAGACGATAAGGAAATCATCA
SsrB_H12K_RP SsrB: substituting His12 to K GATGATTTCCTTATCGTCTACTAATAA
SsrB_H12Y_FP SsrB: substituting His12 to Y TTAGTAGACGATTATGAAATCATCA
SsrB_H12A_FP SsrB: substituting His12 to A TTAGTAGACGATGCGGAAATCATCA
SsrB_H12Q_FP SsrB: substituting His12 to Q TTAGTAGACGATCAGGAAATCATCA
SsrB_H12F_FP SsrB: substituting His12 to F TTAGTAGACGATTTTGAAATCATCATT
SsrB_RP SsrB reverse primer TTAATACTCTATTAACCTCATTCTTCG
pKDSsrB_FP To amplify ssrB.H12Q with homology to pKD3 ATATGAATATCCTCCTATGAAAGAATATAAGATCTTATTA
H12Q_CmR_RP1 To amplify ssrB.H12Q with homology upstream of catR GGACCATGGCTAATTCCCATTTAATACTCTATTAA
GA_CmR_FP To amplify pKD3 with homology to ssrB.H12Q TTAATAGAGTATTAAATGGGAATTAGCCATGGTCC
pKD3_FP To amplify pKD3 with homology to ssrB.H12Q GATCTTATATTCTTTCATACTAAGGAGGATATTCATAT
Lam_FP To amplify ssrB.H12Q.catR with 40 bp homology upstream of ssrB in 14028s ATTACTTAATATTATCTTAATTTTCGCGAGGGCAGCAAAATGAAAGAATA
Lam_RP2 To amplify ssrB.H12Q.catR with 40 bp homology downstream of ssrB in 14028s CAAAATATGACCAATGCTTAATACCATCGGACGCCCCTGGGTGTAGGCTGGAG
Ex_SsrB_F To confirm insertion of ssrB.H12Q.catR in 14028s TTGGTATGCTATGTCATAGACA
Ex_SsrB_R To confirm insertion of ssrB.H12Q.catR in 14028s GTGCGGCATACCAGGGCATC
pMPM_FP For sequence check of constructs in pMPMA5Ω TACCTGACGCTTTTTATCGC
pMPM_RP For sequence check of constructs in pMPMA5Ω CTTCTCTCATCCGCCAAAAC
sseI hairpin Used for single-molecule unzipping assay 5′-Biotin-TTTTTTTTTTTCTATGCGCCAGTCCTTAATGGCATTATCTGAATCGTTAAGTAATTTCTTGTG TGAAATTACTTAACGATTCAGATAATGCCATTAAGGACTGGCGCATAGAGCAGCGTCCCGGGCGGCC