REAGENT or RESOURCE	SOURCE	IDENTIFIER
Antibodies
anti-influenza A nucleoprotein	BEI Resources	Clone DPJY03
Mouse anti-pan cytokeratin	Abcam	clone AE1/AE3
mouse anti-human CD163	ThermoFisher/eBioscience	eBioGHI/61
goat anti-mouse IgG2a Alexa Fluor 647	ThermoFisher	A-21241
goat anti-mouse Alexa Fluor 546	ThermoFisher	A-11030
Bacterial and virus strains
H5N1 (A/Vietnam/1203/2004)	Daniel Perez, University of Georgia	N/A
Biological samples
Cynomologus macaque lung & bronchoalveolar lavage	This paper	N/A
Cynomolgus macaque plasma	This paper	N/A
Chemicals, peptides, and recombinant proteins
TRIzol	Invitrogen	15-596-018
Critical commercial assays
Anti-NP inhibition assay	Virusys	IAV207-2
RNA Clean and Concentrator	Zymo	R1018
Reliance One-Step Multiplex Supermix	BioRad	12010220
rowheadDeposited data
Raw telemetry & plethysmography data	Available on request	N/A
Exported & analyzed telemetry & plethysmography data	Available on request	N/A
ELISA, qRT-PCR, PRNT, plaque assay data	Available on request	N/A
Aerosol exposure data	Available on request	N/A
Immunohistochemistry images & alveolar space analysis data	Available on request	N/A
rowheadExperimental models: Cell lines
MDCK cells	ATCC	CCL-34
Experimental models: Organisms/strains
Cynomolgus macaques, Mauritius origin	VRC	N/A
Oligonucleotides
Influenza A primers and probes	BEI Resources	NR-15592
Software and algorithms
Prism 9	GraphPad	https://www.graphpad.com/
Ponemah 6.5	Data Sciences International	http://datasci.com
Finepointe 2.8	Data Sciences International	http://datasci.com
MatLab 2020a	MatLab	https://www.mathworks.com/products/matlab.html
NIS-ElementsAR v5.30.01	Nikon	https://www.microscope.healthcare.nikon.com/products/software/nis-elements
ImageJ	NIH	https://imagej.nih.gov/ij/
rowheadOther
Temperature data analysis code	Reed Lab	https://github.com/ReedLabatPitt/Reed-Lab-Code-Library
Quadrivalent influenza vaccine + Addavax	Quadrivalent influenza vaccine: Seqirus. Addvax: Invivogen	Quadrivalent influenza vaccine: Afluria 2018-19. Addavax: vac-adx-10