Table 1. Genome data for Protocalliphora azurea, idProAzur1.1.
| Project accession data | ||
|---|---|---|
| Assembly identifier | idProAzur1.1 | |
| Species | Protocalliphora azurea | |
| Specimen | idProAzur1 | |
| NCBI taxonomy ID | 226133 | |
| BioProject | PRJEB48588 | |
| BioSample ID | SAMEA7746778 | |
| Isolate information | male, whole organism | |
| Assembly metrics | Benchmark | |
| BUSCO * | C:98.7%[S:98.4%,D:0.4%],
F:0.5%,M:0.8%,n:3,285 |
C ≥ 95% |
| Percentage of assembly mapped to
chromosomes |
99.96% | ≥ 95% |
| Sex chromosomes | X and Y chromosomes | localised homologous pairs |
| Organelles | Mitochondrial genome assembled | complete single alleles |
| Raw data accessions | ||
| PacificBiosciences SEQUEL II | ERR7254656, ERR7254657 | |
| 10X Genomics Illumina | ERR7253241–ERR7253244 | |
| Hi-C Illumina | ERR7253240 | |
| PolyA RNA-Seq Illumina | ERR10123665 | |
| Genome assembly | ||
| Assembly accession | GCA_932274085.1 | |
| Accession of alternate haplotype | GCA_932273785.1 | |
| Span (Mb) | 874.2 | |
| Number of contigs | 411 | |
| Contig N50 length (Mb) | 8.4 | |
| Number of scaffolds | 23 | |
| Scaffold N50 length (Mb) | 164.2 | |
| Longest scaffold (Mb) | 212.8 | |
| Genome annotation | ||
| Number of protein-coding genes | 11,936 | |
| Non-coding genes | 1,744 | |
| Gene transcripts | 18,968 | |
* BUSCO scores based on the diptera_odb10 BUSCO set using v5.3.2. C = complete [S = single copy, D = duplicated], F = fragmented, M = missing, n = number of orthologues in comparison. A full set of BUSCO scores is available at https://blobtoolkit.genomehubs.org/view/idProAzur1.1/dataset/CAKNZY01/busco.