Table 3. Software tools and versions used.
Software tool | Version | Source |
---|---|---|
BlobToolKit | 3.2.6 | Challis et al., 2020 |
freebayes | 1.3.1-17-gaa2ace8 | Garrison & Marth, 2012 |
Hifiasm | 0.15.3 | Cheng et al., 2021 |
HiGlass | 1.11.6 | Kerpedjiev et al., 2018 |
Long Ranger
ALIGN |
2.2.2 | https://support.10xgenomics.com/genome-exome/software/pipelines/latest/advanced/other-pipelines |
MitoHiFi | 2 | Uliano-Silva et al., 2022 |
PretextView | 0.2 | Harry, 2022 |
purge_dups | 1.2.3 | Guan et al., 2020 |
YaHS | 1 | Zhou et al., 2022 |