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. 2023 Feb 9;8:67. [Version 1] doi: 10.12688/wellcomeopenres.18872.1

Table 3. Software tools and versions used.

Software tool Version Source
BlobToolKit 3.2.6 Challis et al., 2020
freebayes 1.3.1-17-gaa2ace8 Garrison & Marth, 2012
Hifiasm 0.15.3 Cheng et al., 2021
HiGlass 1.11.6 Kerpedjiev et al., 2018
Long Ranger
ALIGN
2.2.2 https://support.10xgenomics.com/genome-exome/software/pipelines/latest/advanced/other-pipelines
MitoHiFi 2 Uliano-Silva et al., 2022
PretextView 0.2 Harry, 2022
purge_dups 1.2.3 Guan et al., 2020
YaHS 1 Zhou et al., 2022