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. Author manuscript; available in PMC: 2024 Jul 12.
Published in final edited form as: Cell Host Microbe. 2023 Jun 16;31(7):1126–1139.e6. doi: 10.1016/j.chom.2023.05.027

Figure 5. ASV-36-Klebsiella and ASV-3-E. coli in vitro competition results depend on the available nutrients and oxygen concentration.

Figure 5.

On the left is the scheme representing the setup of in vitro competition experiments. On the right is a scatter plot representing log10 ratio of ASV-36 to ASV-3 after 24 hours of growth in 190 tested carbon sources in aerobic and anaerobic conditions. ASV-36-Klebsiella outcompetes ASV-3-E. coli in 59 different carbon sources in the absence of oxygen, (upper half of the scatter plot; p < 0.05 after multiple hypothesis testing; linear mixed-effects model; N=3 independent experiments). In aerobiosis the number of carbon sources that favor ASV-36 rises to 76 (right half of the plot; p < 0.05 after multiple hypothesis testing; linear mixed-effects model; N=3 independent experiments). In blue are marked carbon sources that favor ASV-36, in red those that favor ASV-3 and in gray those in which ASV-36 to ASV-3 ratio differences were non-significant with respect to the inoculum. The numbers of carbon sources favoring ASV-36 (blue) and ASV-3 (red) are displayed. See also Figure S3, Table S2 and Table S3.