Table 10:
Gene list coverage enrichment information for the top 25: NO INFO stands for NO INFORMATION meaning that the ontology term exists in PheKnowLator and is connected to our gene list, but there were no sentences that contained it on the literature side.
OBO ID | OBO label | Gene Coverage | Enriched in all gene list sentences | Enriched in Ignorance |
---|---|---|---|---|
SO:0001217 | protein coding gene | 37 | YES* | YES |
GO:0005515 | response to virus | 23 | NO INFO | NO INFO |
CL:0000094 | granulocyte | 19 | YES | NO |
GO:0005886 | plasma membrane | 18 | YES | NO |
UBERON:0000178 | blood | 17 | YES | NO |
UBERON:0002371 | bone marrow | 15 | YES | NO |
CL:0000576 | monocyte | 14 | YES | NO |
GO:0005576 | extracellular region | 14 | YES | NO |
GO:0005615 | extracellular space | 13 | YES | NO |
CL:0000775 | neutrophil | 13 | YES | NO |
CHEBI:2504 | aflatoxin B1 | 12 | YES | NO |
CHEBI:39867 | kidney | 11 | NO INFO | NO INFO |
GO:0045087 | innate immune response | 11 | YES | YES* |
GO:0070062 | extracellular exosome | 11 | YES | NO |
GO:0016021 | bone marrow | 10 | NO INFO | NO INFO |
SO:0000704 | gene | 9 | YES | YES |
GO:0005829 | cytosol | 9 | YES | NO |
CL:1001608 | foreskin fibroblast | 7 | NO | NO |
UBERON:0001332 | prepuce of penis | 7 | YES* | NO |
GO:0005737 | cytoplasm | 7 | YES | NO |
GO:0006955 | immune response | 7 | YES | YES |
CL:0000765 | erythroblast | 7 | NO | NO |
UBERON:0000955 | brain | 6 | YES | YES |
GO:0035580 | lead(0) | 6 | NO INFO | NO INFO |
CL:0000771 | eosinophil | 6 | YES | NO |
Statistically significant with FDR but not family-wise error.