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. Author manuscript; available in PMC: 2023 Sep 27.
Published in final edited form as: J Biomed Inform. 2023 Jun 1;143:104405. doi: 10.1016/j.jbi.2023.104405

Table 10:

Gene list coverage enrichment information for the top 25: NO INFO stands for NO INFORMATION meaning that the ontology term exists in PheKnowLator and is connected to our gene list, but there were no sentences that contained it on the literature side.

OBO ID OBO label Gene Coverage Enriched in all gene list sentences Enriched in Ignorance
SO:0001217 protein coding gene 37 YES* YES
GO:0005515 response to virus 23 NO INFO NO INFO
CL:0000094 granulocyte 19 YES NO
GO:0005886 plasma membrane 18 YES NO
UBERON:0000178 blood 17 YES NO
UBERON:0002371 bone marrow 15 YES NO
CL:0000576 monocyte 14 YES NO
GO:0005576 extracellular region 14 YES NO
GO:0005615 extracellular space 13 YES NO
CL:0000775 neutrophil 13 YES NO
CHEBI:2504 aflatoxin B1 12 YES NO
CHEBI:39867 kidney 11 NO INFO NO INFO
GO:0045087 innate immune response 11 YES YES*
GO:0070062 extracellular exosome 11 YES NO
GO:0016021 bone marrow 10 NO INFO NO INFO
SO:0000704 gene 9 YES YES
GO:0005829 cytosol 9 YES NO
CL:1001608 foreskin fibroblast 7 NO NO
UBERON:0001332 prepuce of penis 7 YES* NO
GO:0005737 cytoplasm 7 YES NO
GO:0006955 immune response 7 YES YES
CL:0000765 erythroblast 7 NO NO
UBERON:0000955 brain 6 YES YES
GO:0035580 lead(0) 6 NO INFO NO INFO
CL:0000771 eosinophil 6 YES NO
*

Statistically significant with FDR but not family-wise error.