Skip to main content
. Author manuscript; available in PMC: 2024 Jul 27.
Published in final edited form as: Eur Biophys J. 2023 Jul 27;52(4-5):267–280. doi: 10.1007/s00249-023-01671-y

Table 3.

Sedimentation and diffusion coefficients of minicircle topoisomers with 95% confidence limits

Sample (°C) s20,W(S) D20,W (10−7 cm2 s− 1)

333 bp Linear 4 6.48 1.44
12 6.51 1.49
20 6.57 1.51
28 6.59 1.57
37 6.61 1.56
Nicked 4 7.34 1.64
12 7.42 1.70
20 7.47 1.72
28 7.53 1.76
37 7.50 1.81
Supercoiled Less compact species 4 7.84 ± 0.63 1.61 ± 1.76
12 7.86 ± 0.39 1.95 ± 0.38
20 7.99 ± 0.29 2.17 ± 0.73
28 8.03 ± 0.27 2.40 ± 0.75
37 7.90 ± 0.41 1.97 ± 0.44
More compact species 4 8.52 ± 0.30 2.00 ± 1.28
12 8.52 ± 0.34 1.81 ± 0.90
20 8.60 ± 0.32 1.85 ± 0.52
28 8.56 ± 0.39 1.56 ± 0.61
37 8.65 ± 0.30 1.55 ± 0.29
(°C) s20,W(S) D20,W (10−7 cm2 s− 1)
339 bp Linear 4 6.51 1.46
12 6.54 1.47
20 6.61 1.50
28 6.62 1.54
37 6.63 1.54
Nicked 4 7.46 1.62
12 7.44 1.69
20 7.50 1.71
28 7.50 1.73
37 7.52 1.76
Supercoiled Less compact species 4 7.71 ± 0.47 1.63 ± 0.50
12 8.09 ± 0.34 1.99 ± 0.49
20 8.10 ± 0.33 2.10 ± 0.51
28 8.03 ± 0.31 2.16 ± 0.56
37 7.90 ± 0.39 1.89 ± 0.31
More compact species 4 8.45 ± 0.32 1.93 ± 0.93
12 8.57 ± 0.39 1.72 ± 0.42
20 8.57 ± 0.44 1.71 ± 0.60
28 8.68 ± 0.44 1.69 ± 0.36
37 8.68 ± 0.37 1.55 ± 0.34

Where confidence limits are not shown, the confidence limits were exactly zero as assessed by Monte Carlo analysis. The values of linear and nicked samples are obtained from global GA-MC models, whereas the values of supercoiled samples are obtained from global 2DSA-MC models