Table 2.
Basic information about genes from the GWAS and transcription analysis. The russet and green varieties were used as case and control groups, respectively. The significance of the gene is measured by the value of log (fold change), p-value and q value.
| Gene ID | Description | Case Vsctrl. Log (Fold Change) |
Case Vsctrl. P Value |
Case Vsctrl. Q |
Case Vsctrl. Significant |
|---|---|---|---|---|---|
| Chr6.g52876 | ethylene-responsive transcription factor 2-like | 0.43 | 0.32 | 0.73 | FALSE |
| Chr3.g19750 | abc transporter g family member 3-like | –0.08 | 0.72 | 0.94 | FALSE |
| Chr3.g19751 | cell division cycle protein 48 homolog | –0.07 | 0.73 | 0.94 | FALSE |
| Chr8.g54414 | cytochrome p450 81e8-like | – | – | – | – |
| Chr3.g18954 | hexokinase-3-like | 1.03 | 0.14 | 0.49 | FALSE |
| Chr3.g18987 | phytochromobilin:ferredoxinchloroplastic | 0.08 | 0.78 | 0.96 | FALSE |
| Chr3.g19749 | udp-glycosyltransferase 86a1-like | 2.27 | 0.01 | 0.10 | FALSE |
| Chr3.g18977 | scarecrow-like protein 3 | –0.18 | 0.47 | 0.85 | FALSE |
| Chr3.g18792 | abc transporter g family member 15-like | –4.73 | 1.24 × 10−45 | 1.90 × 10−42 | DOWN |
| Chr3.g18343 | nac domain-containing protein 72-like | 0.50 | 0.17 | 0.56 | FALSE |