Table 1.

Genes related to plant growth-promoting traits.

Acc. No.	Gene	Log2[FC]	Acc. No.	Gene	Log2[FC]
BsCP1			BsPG1
Plipastatin
WP_089172562	PpsC	3.2	WP_086343904	PpsC	3.5
WP_032723105	PpsB	3.0	WP_129092450	PpsB	3.1
WP_160214989	PpsA	4.2	WP_101169517	PpsA	2.9
WP_129092448	PpsD	3.8	WP_080262617	PpsE	4.2
WP_186453377	PpsD	2.4	WP_128737913	PpsD	3.5
			WP_129092448	PpsD	4.5
Bacilysin
WP_003244300	BacB	1.8	WP_003244300	BacB	2.2
WP_032722711	BacD	1.9	WP_124059367	BacD	1.2
Kanosamine
WP_032721285	NtdB	0.5	WP_101169444	NtdA	0.7
AFQ56969	NtdC	7.9	WP_024572383	NtdB	0.5
WP_019712355	NtdA	0.7
Polyketide
WP_080287605	PksL	0.9	WP_185184354	PksL	3.5
WP_003231805	PksG	2.0	WP_024573082	PksG	3.2
WP_124048390	PksF	0.1	WP_173614094	PksF	3.0
			WP_124059875	PksL	2.9
			TDY57959	PksN	2.8
			AGZ20286	PksD	3.2
			WP_167559687	PksJ	3.1
			AGZ20287	PksD	3.0
Phenazine
WP_032723009	PhzF	1.5	WP_069837383	PhzF	1.9
Subtilosin
WP_019712818	AlbD	−0.1	WP_123374486	AlbD	0.7
WP_003222006	AlbB	2.3	QHF59890	Syn. Pro	0.8
WP_032722691	AlbA	1.3	WP_003222006	AlbB	0.4
WP_003222002	BesA	6.1	WP_123374484	AlbA	−1.6
WP_015250988	AlbG	1.2	WP_003222002	Sub. A	−3.0
			WP_021480840	AlbG	0.8
Surfactin
WP_144481589	SrfAA,	−4.1	WP_137200567	SrfAA	2.3
WP_029726578	SrfAD	−2.6	WP_185184456	SrfAD	3.2
WP_032722905	SrfAC	−4.2	WP_185184457	SrfAC	1.4
WP_160215003	SrfAA	−2.7	WP_167559147	SrfAA	1.3
WP_015715234	Sfp	0.0	WP_003234549	sfp	3.1
			WP_129092244	SrfAB	1.0
Phosphatase
WP_003245272	PhoH	2.6	WP_080009778	PhoA	5.4
WP_010886458	PhoA	2.1	WP_101169869	PhoD	6.7
WP_032722881	PhoD	0.8	WP_076458498	PhoB	5.6
WP_080287651	PhoB	1.6	WP_014476350	PhoE	3.1
WP_003233157	PhoE	1.0	WP_014477373	PhoH	0.7
WP_014477373	PhoH	0.6	WP_129092478	phytase	6.2
WP_003230820	phytase	6.6
IAA
WP_032722039	TrpC	0.5	WP_003230601	TrpC	3.1
WP_003245959	TrpD	0.7	WP_134981823	TrpD	3.7
WP_032722038	TrpB	1.4	WP_128737986	TrpB	4.2
WP_032722040	TrpE	−0.3	WP_032722040	TrpE	3.7
WP_003233236	TrpP	−0.1	WP_003233236	TrpP	3.5
WP_003230608	TrpA	1.1	WP_124058510	TrpA	1.9
WP_029725858	PatB	−1.4	WP_153256127	DhaS	0.8
			WP_024571520	PatB	2.5
			WP_021076225	iaaH	−1.0
Terpenoids
AGA20733	IspF	−1.2	WP_181219684	fni	1.8
AGA24047	Dxr	−2.0	AGA20733	IspF	1.3
WP_003235019	IspD	0.0	AGA24047	Dxr	−1.1
WP_032722383	fni	3.8	WP_003235520	IspD	0.3
2,3-BD
6IE0-A	R-BDH	2.3	WP_029946299	bdhA	−2.1
Serine protease
WP_014479598	Isp	4.8	WP_024572446	AprX	5.6
WP_032721588	AprX	−1.0	WP_014479598	Isp	4.0
WP_015250812	HtrC	−1.5	WP_015250812	HtrC	1.3
WP_032722717	Vpr	3.1	WP_134982250	Vpr	4.9
			WP_015382840	TLS	3.6
Bacillibactin
WP_019712937	DhbC	−0.8	WP_014480725	DhbA	3.1
WP_019712934	DhbF	0.0	WP_029946202	DhbE	1.6
			WP_106073425	DhbB	1.5
			WP_042974556	DhbC	2.6
			WP_185183915	DhbF	2.5
			WP_129092200	Btr	3.9
			KAF1340485.1	DhbA	3.9
EPS
WP_194395382	EpsB	0.0	WP_194395382	EpsB	2.9
WP_032722561	EpsE	−1.3	WP_181220166	EpsC	3.2
WP_015714749	EpsG	−1.2	WP_128993438	EpsE	3.0
WP_003246541	EpsK	1.1	WP_015714749	EpsG	2.8
			WP_003234384	EpsK	3.2
			WP_124059006	pdeH	1.6
			WP_166443901	sugtrans	4.2
			WP_123373775	EpsI	1.7
Spermidine
WP_003227543	speE	−0.2	WP_003227543	speE	1.1

FC represents the fold change in expression levels during the stationary phase as compared to the log phase.