Table 2.
Data summary of the genomes of Acidithiobacillus species available in the NCBI Database. The genomes used as a reference in the analysis are those considered by the database as “NCBI reference genomes” (the best assembled deposited biotype is selected as reference one). These genomes are always one biotype from the indicated strains (2nd row).
| A. ferrooxidans | A. ferrivorans | A. ferriphilus | A. ferridurans | A. ferrianus | A. thiooxidans | A. caldus | A. sulfuriphilus | A. albertensis | |
|---|---|---|---|---|---|---|---|---|---|
| Reference genome |
ASM1346280v1 | NEW_PRJEB5721 | ASM2084402v1 | ASM396665v1 | ASM1037809v1 | ASM966247v1 | ASM869422v1 | ASM372122v1 | ASM193165v1 |
| Strain | YNTRS-40 | PRJEB5721 | GT2 | JCM 18981 | MG | ATCC 19377 | MTH-04 | CJ-2 | DSM 14366 |
| Deposited genomes |
64 | 12 | 12 | 9 | 1 | 26 | 24 | 1 | 2 |
| Completed genomes |
5 | 3 | 2 | 1 | 0 | 1 | 4 | 0 | 0 |
| Total genes | 3542 | 3781 | 2633 | 3173 | 3467 | 3707 | 2995 | 3083 | 3909 |
| Hypothetical proteins |
38.18% | 43.67% | 34.26% | 36.53% | 39.72% | 45.75% | 41.17% | 38.11% | 43.34% |
Note: A genome is considered complete, according to the NCBI definition, “when all chromosomes are gapless and contain no runs of 10 or more ambiguous bases (Ns). Additionally, there should be no unplaced or unlocalized scaffolds, and all the expected chromosomes must be present. Plasmids may or may not be included in the assembly, but if present, their sequences should be gapless”. Total genes and hypothetical proteins were determined after RAST server annotation of type strains for each species.