Table 4.
SNP overview.
| Smooth | Curly | ||||||
|---|---|---|---|---|---|---|---|
| Event | Confiance | Flester | E02S | Domari | Myrna | Imari | A32861 |
| No calls | 18 | 12 | 43 | 22 | 46 | 59 | 10 |
| HomoREF | 41 | 36 | 40 | 49 | 41 | 39 | 52 |
| Het | 66 | 72 | 53 | 59 | 45 | 40 | 63 |
| HomoALT | 75 | 80 | 64 | 70 | 68 | 62 | 75 |
| TOT variants a | 141 | 152 | 117 | 129 | 113 | 102 | 138 |
| SNP | 104 | 108 | 87 | 95 | 83 | 79 | 98 |
| INDEL | 37 | 44 | 30 | 34 | 30 | 23 | 40 |
| Coverage (%) | 98.4 | 97.2 | 74.3 | 96.1 | 93.8 | 70.1 | 83.4 |
| Coverage (kbp) b | 150.36 | 148.53 | 113.54 | 146.85 | 143.33 | 107.12 | 127.44 |
| Freq (variants/kb) | 0.94 | 1.02 | 1.03 | 0.88 | 0.79 | 0.95 | 1.08 |
| Freq (bp/variants) | 1066.4 | 977.2 | 970.4 | 1138.4 | 1268.4 | 1050.2 | 923.5 |
a, Total variants account for the sum of heterozygous and homozygous for alternative allele genotypes. b, Normalised with respect to the length of the Confiance cp genome.